MmuEX6006557 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119227080-119228281:+
Coord C1 exon
chr6:119227080-119227157
Coord A exon
chr6:119227838-119227918
Coord C2 exon
chr6:119228207-119228281
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTGCACTGTCCCTTCTAGAGA
3' ss Score
8.61
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTTCACATCAGAGGCACAGAGCCTGATGCTCCTCACCACAGTGGCCATGCCTGTCTTCAGCAAAAAGAATGAAACA
Seq A exon
AGATCCCATGGCATTCTCCTGGGTGTAGTGGGCTCTGACGTGACCCTAAGAGAGCTCATGAAGCTGGCACCCCGATATAAG
Seq C2 exon
CTTGGGGTGCATGGCTATGCCTTCTTGAACACTAACAATGGCTACATCCTCTCTCATCCTGACCTCCGACCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'13-14,'13-13,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(26.6=100)
A:
PF0274313=Cache_1=FE(27.7=100)
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACATCAGAGGCACAGAGC
R:
CAAAGGTCGGAGGTCAGGATG
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: