HsaEX6064488 @ hg19
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:20202]
Coordinates
chr12:1984417-1988202:-
Coord C1 exon
chr12:1988122-1988202
Coord A exon
chr12:1987481-1987555
Coord C2 exon
chr12:1984417-1984503
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCCACCCTGGACTCTGGCAGCTT
3' ss Score
3.54
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq A exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
Seq C2 exon
TACAGAGAGGGGAAGAAACTAAAACCCAAACCTAACTACAACAGTGTGGATCTCTCCGAAGTGGAGTGGGAAGACCAGGCTGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.093 C2=0.235
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
PF0274313=Cache_1=FE(25.5=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCCATGGCATTCTCCTG
R:
AGATTCAGCCTGGTCTTCCCA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)