DreEX6102112 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18962226-18963273:-
Coord C1 exon
chr25:18963115-18963273
Coord A exon
chr25:18962420-18962494
Coord C2 exon
chr25:18962226-18962312
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTAATGATGGTGTCGTTTAGCTT
3' ss Score
2.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGTTCAAGAGCAAGGCTCACAGTCTGCTGTTCATGACGTCGGTGGCCATGCCAGTGTTCAGTAAGAAGAAAGAAACACTTTCTCATGGCATTTTGCTAGGTGTTGTGGGAACTGACATCCCCCTGCTGGAGGTCATGAAACTTGCCCCGCGATATAAG
Seq A exon
CTTGGAGCACACGGCTACGCTTTCCTCATCACAAACAATGGCTACATCCTGGCACATCCTGACTTAAGACCACTG
Seq C2 exon
TACTATGAAGGAAAGAAATTGAAACCCAAGCCTAACTACAACAGTGTGGATCTGTCCGAGGCTGAGTGGGAGGACACTGAAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(55.3=100)
A:
PF0274313=Cache_1=FE(25.5=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGCCAGTGTTCAGTAAGA
R:
CCTCGGACAGATCCACACTGT
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]