GgaEX6002690 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61191302-61195085:-
Coord C1 exon
chr1:61195005-61195085
Coord A exon
chr1:61192751-61192825
Coord C2 exon
chr1:61191302-61191388
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCATGCCTCTTTCTCCAGCTG
3' ss Score
9.28
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
CGGTCTCACGGCATTCTCCTGGGTGTGGTGGGCTCTGATGTGCCACTGAGAGAGTTGTTAAAACTTGCTCCACGTTATAAG
Seq A exon
CTGGGTGTCCATGGATATGCCTTTCTGAACACCAACAATGGCTACATCCTCTCACACCCAGACCTCCGTCCTTTG
Seq C2 exon
TATAAAGAAGGAAAGAAACTGAAGCCTAAGCCAAACTACAACAGTGTGGATCTCTCAGAAGTGGAATGGGAAGACCAGGATGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'17-15,'17-14,18-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
PF0274313=Cache_1=FE(25.5=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTCACGGCATTCTCCT
R:
ATTTCATCCTGGTCTTCCCATTCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]