RnoEX0016143 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151336952-151340790:+
Coord C1 exon
chr4:151336952-151337032
Coord A exon
chr4:151337314-151337388
Coord C2 exon
chr4:151340704-151340790
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCAACCCTTGACCTTGGCAGCTC
3' ss Score
5.11
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCTGACGTGACCCTAAGAGAGCTCATGAAGCTGGCACCCCGATATAAG
Seq A exon
CTCGGGGTACATGGCTATGCCTTTTTGAACACTAACAATGGCTACATCCTCTCTCATCCTGACCTCCGACCTTTG
Seq C2 exon
TACAGAGAAGGCAAGAAGTTGAAACCCAAGCCCAACTACAACAGTGTGGACCTCTCAGAAGTGGAGTGGGAGGACCAAGCTGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'18-22,'18-21,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
PF0274313=Cache_1=FE(25.5=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCCATGGCATTCTCCTG
R:
ATTTCAGCTTGGTCCTCCCAC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]