GgaEX6002690 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63185214-63188997:-
Coord C1 exon
chr1:63188917-63188997
Coord A exon
chr1:63186663-63186737
Coord C2 exon
chr1:63185214-63185300
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCATGCCTCTTTCTCCAGCTG
3' ss Score
9.28
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
CGGTCTCACGGCATTCTCCTGGGTGTGGTGGGCTCTGATGTGCCACTGAGAGAGTTGTTAAAACTTGCTCCACGTTATAAG
Seq A exon
CTGGGTGTCCATGGATATGCCTTTCTGAACACCAACAATGGCTACATCCTCTCACACCCAGACCTCCGTCCTTTG
Seq C2 exon
TATAAAGAAGGAAAGAAACTGAAGCCTAAGCCAAACTACAACAGTGTGGATCTCTCAGAAGTGGAATGGGAAGACCAGGATGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'14-15,'14-14,15-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(26.0=100)
A:
PF0274313=Cache_1=FE(24.0=100)
C2:
PF0274313=Cache_1=PD(6.0=20.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTCACGGCATTCTCCT
R:
ATTTCATCCTGGTCTTCCCATTCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]