DreEX6002516 @ danRer10
Exon Skipping
Gene
ENSDARG00000026855 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20552571-20553469:-
Coord C1 exon
chr4:20553389-20553469
Coord A exon
chr4:20553131-20553205
Coord C2 exon
chr4:20552571-20552657
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCATTCTCATTTCAGCTG
3' ss Score
10.59
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTCTCTCATGGCATCCTCCTCGGTGTGGTTGGCACTGATGTTCCCTTGAAGGAGCTCATGAGATTGGCTCCTCGATACAAG
Seq A exon
CTGGGGGTTCACGGCTATGCATTCTTAAACACTAATAATGGTTATATACTCTCTCATCCTGACCTTCGACCTCTG
Seq C2 exon
TATAAAGATGGCAAGAAGCTGAAGCCAAAGCCGAACTATAACAGTGTGGATTTATCAGAGGTGGAGTGGGAGGATACAGAAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026855-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(30.3=100)
A:
PF0274313=Cache_1=FE(28.1=100)
C2:
PF0274313=Cache_1=PD(7.9=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATGGCATCCTCCTCG
R:
TGCATCTTCTGTATCCTCCCACT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]