HsaEX6064488 @ hg38
Exon Skipping
Gene
ENSG00000151062 | CACNA2D4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr12:1875251-1879036:-
Coord C1 exon
chr12:1878956-1879036
Coord A exon
chr12:1878315-1878389
Coord C2 exon
chr12:1875251-1875337
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCCACCCTGGACTCTGGCAGCTT
3' ss Score
3.54
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq A exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
Seq C2 exon
TACAGAGAGGGGAAGAAACTAAAACCCAAACCTAACTACAACAGTGTGGATCTCTCCGAAGTGGAGTGGGAAGACCAGGCTGAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-'21-29,'21-28,22-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.159 C2=0.201
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
PF0274313=Cache_1=FE(25.5=100)
C2:
PF0274313=Cache_1=PD(6.4=20.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCCATGGCATTCTCCTG
R:
AGATTCAGCCTGGTCTTCCCA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains