HsaEX6067193 @ hg19
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56999614-57000517:-
Coord C1 exon
chr12:57000417-57000517
Coord A exon
chr12:57000031-57000096
Coord C2 exon
chr12:56999614-56999847
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTTATGGTTTACAGGCC
3' ss Score
7.17
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AAACATTGAATGAGGAGGATAAAGCAAAGATTGCTAAAAGCAAGAAGAAGATGAGGCAGAAGGTTCAACGGGGAGAGTGTCAGACTACTATCCAAGGGCAG
Seq A exon
GCCAGAAATAAGCGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCTAAGAAGAAATCCAAG
Seq C2 exon
GCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGACCCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-'17-22,'17-21,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(14.5=100)
A:
PF0449910=SAPS=FE(9.2=100)
C2:
PF0449910=SAPS=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTTCAACGGGGAGAGT
R:
CTTTACAGGCTGGCTTGGCTT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)