BtaEX6022183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57151370-57152225:+
Coord C1 exon
chr5:57151370-57151470
Coord A exon
chr5:57151746-57151811
Coord C2 exon
chr5:57151992-57152225
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTTTATGGTTTACAGGCC
3' ss Score
7.93
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AAACACTGAATGAGGAGGATAAAGCAAAGATGTGTAAAATCAAGAAGAAGATAAAGCAGAAGGTGCAGCGGGGAGAGTGTCAGACTACTAACCAAGGGCAG
Seq A exon
GCCAAAAACAAGAGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCCAAGAAGAAATCCAAG
Seq C2 exon
GCTGAGAAGGAGAAGGTAAAAACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAGAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGGCCAAGACCAAGCCAACGGGTAAAGCAGATAAAGTGCTGGCCACACAGAGGCGCTTGGAGGAGCGGCAGAGGCAGCAGATGATCTTGGAGGAGATGAAGAAGCCCACAGAGGACATGTGTCTGACTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'20-25,'20-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.949
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(14.7=100)
A:
PF0449910=SAPS=FE(9.4=100)
C2:
PF0449910=SAPS=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAGAGTGTCAGACTACT
R:
GTGGCCAGCACTTTATCTGCT
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]