MmuEX6052083 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127555611-127556556:+
Coord C1 exon
chr10:127555611-127555711
Coord A exon
chr10:127556011-127556076
Coord C2 exon
chr10:127556326-127556556
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTTGTGGTTTACAGGCC
3' ss Score
9.18
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAG
Seq A exon
GCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAG
Seq C2 exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'21-30,'21-29,23-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAGAAAGTCAGACTCCT
R:
TTCTGTGTGGCAAGGGTCTTG
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: