HsaEX6067193 @ hg38
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56605830-56606733:-
Coord C1 exon
chr12:56606633-56606733
Coord A exon
chr12:56606247-56606312
Coord C2 exon
chr12:56605830-56606063
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTTATGGTTTACAGGCC
3' ss Score
7.17
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AAACATTGAATGAGGAGGATAAAGCAAAGATTGCTAAAAGCAAGAAGAAGATGAGGCAGAAGGTTCAACGGGGAGAGTGTCAGACTACTATCCAAGGGCAG
Seq A exon
GCCAGAAATAAGCGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCTAAGAAGAAATCCAAG
Seq C2 exon
GCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGACCCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-'51-61,'51-58,54-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTTCAACGGGGAGAGT
R:
CTTTACAGGCTGGCTTGGCTT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains