RnoEX0014165 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2539223-2540135:+
Coord C1 exon
chr7:2539223-2539323
Coord A exon
chr7:2539594-2539659
Coord C2 exon
chr7:2539920-2540135
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTTATGGTTTACAGGCC
3' ss Score
7.17
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
AAACACTGAGTGAGGAAGATAAAGCAAAGATGACTAAGAGCAAAAAGAAGGTGAGGCAGAAGGTTCAGCGGGGAGAGAGTCAGCCTCCTGTCCAAGGGCAG
Seq A exon
GCCAGAAACAAGAGGAAGCAAGACACCAAGAACTCAAAGCCGAAGGACACTAAGAGGAAGTTCAAG
Seq C2 exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAGAAGCTGAAGGAAAAGGTGAAGAGGGAAAAGAAAGAAAAGGTAAAAGTGAAGGGAAAGGAAGAGCCCAGAGCCAGGCCATCCTGTAGAGCTACACAGAGGCGACTGGAGGAGCGGCAGAGGCAGCAGGTCATCTTGGAGGAGATGAAGAAGCCCACGGAGGATATGTGTCTGGCTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'18-25,'18-24,19-25
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGTCAGCCTCCTGTCC
R:
CAGTCGCCTCTGTGTAGCTCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]