MmuEX6052083 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128118555-128119500:+
Coord C1 exon
chr10:128118555-128118655
Coord A exon
chr10:128118955-128119020
Coord C2 exon
chr10:128119270-128119500
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTTGTGGTTTACAGGCC
3' ss Score
9.18
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AAATACTGAGTGAGGACGATAAAGCAAAGATGACTAAAAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGGGCAG
Seq A exon
GCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAAGAAATTGAAG
Seq C2 exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGAAAAGGTAAAGCGAGAAAAGAAAGAAAAGGTAAAAGCGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGAGATGAAGAAGCCCACAGAGGATATGTGTCTGTCTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'25-42,'25-39,26-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAGAAAGTCAGACTCCT
R:
TTCTGTGTGGCAAGGGTCTTG
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types