HsaINT0027465 @ hg38
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42409303-42409844:+
Coord C1 exon
chr15:42409303-42409380
Coord A exon
chr15:42409381-42409786
Coord C2 exon
chr15:42409787-42409844
Length
406 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCCTCTCCCTTCCTCCTCAGGAC
3' ss Score
12.28
Exon sequences
Seq C1 exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
Seq A exon
GTGAGTACCTCCAAGCCCAGGACGCCCACAGGTGCTTCCTTCTCTCCTGGATTAACTGCTCAGATTACCAATTATTTCATTATTGTTTGGTAGAGGTCACTTTGGACTTTGGTGGAGCCAGGGGATGTGTGCGTAGCACACAAATCCACAAGCCCTTGAGTTTTGGACTGCCACGTCTGCTGGGGGGCTCAGAGGCCTTTTTGCTCTGAGCTGCCCACGGTGGTCCTGATAGCTGAGGTGCAGTATCTGGCCCCCTGTCTTCCTCAGAAAAGCCCCAGCTTCCCATGACATAATAGCACCGACAGGGATTTTACAAACACAGCCAGGTGGAATTTGTTTTGCAAAGTGTCCGCGCCAGGAGCTGCTGTACTCCTGAACCATGACCCTCCTCTCCCTTCCTCCTCAG
Seq C2 exon
GACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529:ENST00000318023:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.720 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PU(28.2=42.3)
A:
NA
C2:
PF138331=EF-hand_8=PU(30.5=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development