RnoINT0029064 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112275070-112275534:+
Coord C1 exon
chr3:112275070-112275147
Coord A exon
chr3:112275148-112275476
Coord C2 exon
chr3:112275477-112275534
Length
329 bp
Sequences
Splice sites
5' ss Seq
GACGTATGT
5' ss Score
7.83
3' ss Seq
ATAATTCTTTTCTCCCTCAGGAC
3' ss Score
10.3
Exon sequences
Seq C1 exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
Seq A exon
GTATGTATTCCTCTCCTAGCTCAGAGACCCAACTATTCAAGTGGCTCATTGTTTAACAGAGGTCATTTGATTTGGGAGATCCAGAGAATGTGGGTTGTTTTGTGTTCTGGACTAAGACAACCATTGAGTGGCTCGGAGCCTTCTGGCAATGAGCTGCTGGCTGTGGTCTGGACAGCTGAGGGTGCAAAACCAAACCCATCTTGCTCAGAAAAGCCCCAGCCTCCCATGGCAGAGGAAAGGGGGTCTTACACATGTGGGCAGCCAGGACTCGTCTTGCAAAGCCACTGCCCTATTGGCTGCTCTGCCTCCATAATTCTTTTCTCCCTCAG
Seq C2 exon
GACATGGAGATCTGTGCGGATGAACTCAAGAATGTCCTTAATACGGTGGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(50.0=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]