HsaINT0027477 @ hg38
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42392639-42394341:+
Coord C1 exon
chr15:42392639-42392722
Coord A exon
chr15:42392723-42394255
Coord C2 exon
chr15:42394256-42394341
Length
1533 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
GCTCTTTCTGTGTGCTTAAGGTC
3' ss Score
7.38
Exon sequences
Seq C1 exon
ACAATCATTCCGGTTCAGTATGAGACAAGAATGGCCTGCGGGCTGGTCAGAGGTCACGCCTACTCTGTCACGGGGCTGGATGAG
Seq A exon
GTAAGCCTGGTGGGGCTTGGTGGGGCAAGGGCACCCTCCTGGGTTAACCTCATGAAGTCAGGACTTAGCTGTTGGGGCCCCTTCCCTGTCTGCAGAGCTTGCCTCCAATCAGGACATTCAGTTCAAGGTCCAAGCCACGCCTGGGAGCAGAGGGGCCTGTGAAACTGGTAGAGGTGGATCCTGCCACAGTTGGTGCACAGTTTATCTTTGCTTTTCGTGCTAAAGATGGCAATTTTTCCAACATTTCCAATGAACAAATTGAAATATCACTTAACTTTGCTTTTACAAAGTTGGTTTCATGTGTTCTTGAGCTTCCTGTTCTCTCGTGTTCAGATAGCTACAGTTGTCTCTGGGTAGCCACGGGGACTGGTTCCAGAAGCCCCAACAGTAACAAAATCTGCAGATGCTCAAGTCCCTTCTGTAAAATGGAGTAGTATTTGCATATAACCTATGCACATCCTCCCATATACTTTAAGTCATCTCTGGATTACTTACGATACCTAACACAATGGAAATGCTATGTAAATAGTTATTGCACTGCATTGGGTTTTTTTGGTATTATTTTCTGTTGTTGTATTATTATTTTTTCTTTTTTTGAATATTTTTGATCCACAATTGGTTATATGCCAAAGCCATGGATACGAGAGGCTGACTGTTCTGTTTTGCTCCTTCTGGGACTTCTGGGTTTTCCTGGACCATGTCTGAGACAGGAACGTTGTAAGACCTGTTGCACACAGTTGGGCAGGTTGTGCCCTGTACAGAGGGATGGGCTGAGAGGGGCAGTTGCCTGCATCACCCATTGCAGCAGACTGGAGGGAGTCTGCTTGTTTGTAGTTCCTCAGTCAGCAGGGGCCTTTTGTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGTAGTGGCACAGTCTCGGCTCACTGCAATGTCCGCCTCCTGGATTCAAGCGATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCGTGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGGTTTCTCCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCACCTCGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAGCAGGGGCCTTTTTTCTAATTTATATGAAGACACCTAATTTATATGTGTTAGCAGGGCCCTACTGTTTATGCCTCACCTCCTCCCCCGAAGCTCATAACGGCAGGATGTTCCTGAGAAAATTGCCTCTTAGAAGATAGAGAGGAGATGGCCAAGCCCTAAGTTAGGCAGACTCAGGAGGAAAGGTCTGACCCACCCCCTGCCATTCCCCAGCACACTTGTGATTAATCTCCTTGGCCAGAGCCAGGCAGAACACCCTCGCGTAAGAGATTTGCCCCCCAGCCCCGTCCCAGCCCTCAGCAAGACAGAAGATTCCCTTTCCAGAGAGGCTGCAGAGCATGAGAGCTCTTTCTGTGTGCTTAAG
Seq C2 exon
GTCCCGTTCAAAGGTGAGAAAGTGAAGCTGGTGCGGCTGCGGAATCCGTGGGGCCAGGTGGAGTGGAACGGTTCTTGGAGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529:ENST00000318023:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development