RnoINT0029076 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112259826-112262081:+
Coord C1 exon
chr3:112259826-112259909
Coord A exon
chr3:112259910-112261995
Coord C2 exon
chr3:112261996-112262081
Length
2086 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GAGCTGTCTCTTTGCCCCAGGCC
3' ss Score
8.54
Exon sequences
Seq C1 exon
ACAATTGTTCCGGTGCAGTATGAAACAAGAATGGCCTGTGGACTGGTGAAAGGGCACGCCTATTCAGTCACTGGGCTGGAGGAG
Seq A exon
GTGAGTCTGCTGAAGCTTGGTGGAAACCCCTGAGTTGACCTGCAAAAGTCAGGACTTAACTTTCTATGCCTCTTTCACTACCCAGAGAACTTTCCAGTCAGGGCCCAGCTGGGTTCCTGAGGGTGGAAAGGACCTATGGGACCGACTCTAGGTAGACCTGGCCTCTGATCTTCTTGGTTCAGCTTTGTGTGTAGTGTATGTGTATACTTACACATGTGTGCGTGTGGAGGCCAGGGGTCAGTATTCCTCAGTGGTTTGTCTTATTTCGAGACAATGCCTCTCACTGAGCCTGGACCTAGCAATTGGTTAAACTGCTTGGCCAATGAACTTCAGAGGTCCAACTCTCCCTGTGCTGGGGTTTCAGATATACTTTTGTCTTAGTCAGGTTTCCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAACGGTTTCTTCAACTTACACTTCCACATTGCTGTTCATCACCAAAAGAAGTCAGGACTGGAACTCAAGCAGGCCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTTCTTACTGGTTTGCATCCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGACCACCAGCCCAGGGACGGCACCACCCACAATGGGCCCTCCCACCTTGACCCAGAAAATACCTTACAGATGGATTTCATGAAGGCATTTCCACAACTGAGGCTCCTTTTCTGTGATAACGCCAGCTTGTGTCAAGTTGACACACAAAACTAGCCAGTACAACTTTGTAGTGGCATCTTTTATACATGGGTGCTGGGGATCCAAACTTGGGTCTCTACCCTTGACCAGCAGGAATTTTATCAGCTGAGTGGTTCCCTGGTCCTTCTCTTTGCTTTTAATGCTGAAGACCGGAATTGTTTCTAGTTCTTTCCAAGGAACGATTAGAAACACTACTTTGTCTAATAAAGTTGTTTGTCTACTGCAGGTTTCCTGTCCACTCATGTTTGTACTGCTTCCTGTGGGGTTTCTGAAGTGCCCTGGGTCACTTCCCAAGCAGGAACATTATGAGACTGTAGCATACAGCTGGACAGGTTTATGTCCTGAAAAAAAAAGTAGCCTAAGAGAGGCTGTGTCTGTATCCCCCACTGCACGTGACTGGAGAATAGGGCATCTTTTTCTAATTGGTCCATCGAGAGGCGGCATCTGCCTGTAGTTTAGCCATCAGGGGCCTTTTTTAAAATGACCCACACAGAGGGGTAGTGCGGGGACTCGGTAAAAACACTTACTTGCACAAGTCCGAAGACCTACGTTCAAACCTGGAACCACAGTAGAAGGAGAAGACTAACTCCAGGAAGTTGTCCGCTATGTCCACATGTGCACACCACCCTCACATCAAGCACAAACACATACACATGCAGGTACACTGAATAAAAATAGAGGCAGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAATAGAGGCAGGAGAGGTGGCTCTGCGGTTAAGAGCATTTATTGTTCTTCCAGAGGACCTGGGTTTGAGTCCCAGCACCATTAGGTTGCTTATAACCACCGGTAACTCTAGTTCCGGGAGCTCTGAGAGCCTCTGGCCTGCTCAGTCACTTGCAGGTATGTGGTGCCCATAAACTCATATGGGCAAACATACATCCACATAAATAAAAAAGAATAAAGCCAAACAGAAATACTTGGGGTTGGGAATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAGAAAAGAAAAAAAAAAAAAAAACAGAAATACTTAATATGTTTCTATAGCTTCAACATAAATGTTTAGCCCCCTCCACCAGCACATACAATGGTCAGATGCCTTACCCTGTCGGCAAGCTTCGGGCCAGGCAGGCAGCCTTCATACTGGATTCTCTCAACTTCTACCCAGCCCTCAGACCAAGTCAGATGCCCCATCTTTCCAAACTTGCTTGAGCTTCAGAGCTGTCTCTTTGCCCCAG
Seq C2 exon
GCCCTGTTCAAAGGCGAGAAGGTGAAGCTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]