HsaINT0041852 @ hg19
Intron Retention
Gene
ENSG00000116791 | CRYZ
Description
crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419]
Coordinates
chr1:75196066-75199092:-
Coord C1 exon
chr1:75198640-75199092
Coord A exon
chr1:75196105-75198639
Coord C2 exon
chr1:75196066-75196104
Length
2535 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGTGTAATCTCCTTTGACAGGCT
3' ss Score
7.43
Exon sequences
Seq C1 exon
AGTAGGATGCGGCCAGCGCAGGAGCTGGTGGTGAAAAACTGATCTCGCATGTTCAGAAACTGCACAAGCTCTACCACATCCTCGTCAACACTGCCCTTCCGGCTGAGGTCCGCTTTGCTCAAACATTGCGCCTTCCATTTCCTGAACTCCGCGCTGCGATCCATGGGTGACGGACTCAGGGTCTGCGCTCGGCTCCTTCATGGTAGCCTCGTCTCTCCCTGGGGGCAGCCATATTGAAGCGAGCGGTGGCCGAAAAGGTCCAAACTTCCTCTTCGTTCTTAATTTGGGAAATTCTAGTGCCTTCGCCTAGGGGTGGAGAGAGGCGCACATCCTGGGTGGAGCGAGGCGCACATCCTGGGTGGAGCCTGCAAAAGTTGGAGAAGGTGTGGCAGTCCTCATTTCTGTGGAATCTGAAGAAGCCCACGCAGATTTTAATTCCCACTCTAGATTCTG
Seq A exon
GTAAGTGGTTTTAAAAACTCTCCTTAGTTGTTTAGACAGCGAATCTCCCCACTGCTCGTCCAAGTGGAACCGAGTTTGATTTTGGCTGCACCCCTTTCCTGCCCTCTGTCCTCCCAGAGAACTAGTGCGTAGAGCTCCAGACCGAAGCCATTCCCCTCCAGGGGCTGCAAGTTCCCATCCATAAATCAGGTAGGAAGTTTTGCCTTCTGGTCCTGGGCTCCTAGCCCTGGTCCTGCGTTTAGGCTCTGAGTTTAGGCTACCACACCATGAGGTGTCCGTTGGCACTACCCCTGCCCAGCCTCCGCCCCCCGCACTCCCTGTCCCCCAGCCCCACGCTGCACCCCCCCCCCCCCCCCCCGCCAGTCACCCGCTTGATTTTTCCCTGCAGCCAGTGCCTGGGTTTGGGGATTCCTGCAGCAGCGCCCAGCGGTCTGTCCAGGGCCCCTTCCCACAGCCCAGCTCTCAGCTGTAGAGGATTTGTCCTAGGTAGGGCCCCTTCCCACAGCCCAGCTGTAGGGGATTTCTTCTCCTAGGTAGGGCCCCTTCGCACAGCCCAGCTGTAGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCACCTGTCAGCTGTAGGGGATTTCTCCTAGGTAGGGCTCCTTCCCACAGCCCAGCTGTGGGGGATTTCTTCTCCTAGGTAGTGCCCCTTCGCACAGCCCAGCTGTAGGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCACCTGTCAGCTGTAGGGGATTTCTCCTAGGTAGGGCTCCTTCCCACAGCCCAGCTGTAGGGGATTTCTTCTCCTAGGTAGTGCCCCTTCGCACAGCCCAGCTGTAGGGGATTTGATTTCTTCTCCTAGGTAGGGCCCCTTCCCACAGCCCAGCTGTGGGGGATTTTTTGTCTTGGATTCCCACAATTACAGGTTTCCCGGAGCTTCCTCCAGCTTTGCCATCAGGATTGCAGTCTTTGAGAGAAATGTATAGTTTTATTGACCCTGTGACGCCCACCACCTAGAATAATCTTCAAAAGAAAATTACAAAACACCCTGTTAACACATCGTTGGATGTTTATACTGAGTTTCTAGAGGAGACTCAGTGACCAGGGAAGGTGTGTCAATGATTAAACCTAAAGGCTAAAGTTTGGAATGCTTGTCCGTAGCTAATGGAAATTGTTGTGCGAGTCCCTCTGAAGCCACTGTGATTACGTGTCTGGTTAGCGCAGCGAGTTCAGCAGCAAATCTCTCCAAGCTCTACTCCTCCAGCATTAGGGAACAGACTGCCCTGTTCCATACGATCATGGAACCTGGAGGAGTCCGAAATTATTAAACTCCTCCCCTCTTCTTACCCCGTCCTATCTCAAGTGAACAGAAGTGACCTGATAAGATCACACAGCCAGGAAGAGACTTTCTCTGACCACTTGTAATTCTTGCCTTTTTTACATTTCTGGGTTAATAATAAACCATATGCTTACATGAGTCATTGTGTATTAGCAGCAGAACAATTTGTAATGATTGATTTTTTTTCTAAGTTTTCAGTTTTTAAAATTCTTGCCAGAATTCTTATTTAATTTTACTTTTGCTCTTGTCTCATAATGTTCCTTTGCTCTGGCTTTGTGACTTGATCTGTTCATCCTATGTTAAAATATACTCCTAACATTTTCCCAATTCCTTTAATTTTCGTTTAAATCAAATGGATACAAGCATAGCCAGGAAAAAGATCACTGTTGGAAGAGGGATTTTAGATTTTCTATTTCCTAGATTTGTAAGGCATATTGGCAACCTTTCAGAGGTAAAATTAAACCAAAAATTAAACCAAGGGACTCTTAATTTTTAAAAGTTTATATTTGATAAACAGGAAGGCCTATTTGAAGTATAGTTTAATTAAAAAGCACAAGCAATGGAAAGGCCTGTCCTGTTCACAAGGATCCGATGCTAGGGAGTAATTTTTTTTTATACATTTTTAAAAATAGAATCATGTCCTTTGTATTTCTGCTGCATTCCCTGACTTAGTGGGCATTTGAGAAATTTCAAACTCTAAGCAGATGCCTTAGTCATAAAATATGCGATTCTACCTGCAGGTTAGTTTGATTTCACATTTTCTAGCTCAATCTGTCTCACTATCACTATTGTAAAGTTTATTTCTACGAAGTAAAGGGTCTTATATGCCAGCATCTCAAAGGGTGAGATGAAAAGGATGGTAAAGAAAAAAATCAGCTAACACCATTTAATTACAGGACTTGGGTTCTAGCTTTGCTTCTGTGTGACCCTGACCAAGTCTCTTAACCTCTTGTGATGTTTTCTCATCCATAAAATGGATGGCGATTTTATTTTTACTTCTGCATAAAATAATAGTTTAAATAACTTCTCTACCTGTTCTGAAAACAGTTAAGTCAATGGAGGTGGAAGACTTATGCTTTTTAGAAGAAATCCGGTATTACAGGATTTTAAGTATTATCCTATTTGCCATCAGTATGCCACGTTATTTTATTCTTTGTGTAATCTCCTTTGACAG
Seq C2 exon
GCTTCATCGTTATGAAGCATATGATGATCCCGTGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791-CRYZ:NM_001130042:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)