HsaINT0042881 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr11:57789037-57791673:+
Coord C1 exon
chr11:57789037-57789155
Coord A exon
chr11:57789156-57791384
Coord C2 exon
chr11:57791385-57791673
Length
2229 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCTTACCCTTTCCCGGTAGTGT
3' ss Score
7.82
Exon sequences
Seq C1 exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTTCCATGATTTTTTGAATCTAGACTGGGCTGTTCTCTGTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
Seq A exon
GTGTGTATGGAAATATGTTTATTAAGAAGGAAAAATCTTACTTTTTAAGAAATATGTATTTTTATTCCTTTCATGTCATAGCAGAAAAAAATCTTTTTAAATACCTTTTTTCTTTATGGGTTGGTGAGAGGGTGGGAATTGGGGAGAATATTTATTTCAAAACCTGTCTTTCAACATTGTATATTTTGGACTGGCATAAAGTCTTTCATAGCTATAAGAGAGAAAAAAACCCATTGAGTCCAACAGAGTATCACTAATGCCTGTAAAACCTCCTGTTTATATAATGGTATGGAGAACTCTTCATTTTTATATAACTATCTTTTATTGTATAGATAGCACACATAGACCCTCTAGATACTTGGATATTTATCCTGAGTTGGAACAAATAAAAGGGTAAAAAGATAGTCTATTTAAAACAAGAGTGTCCAATCTTTTGGCTTCCCTGGGCTACAGTGGAAGAAGAATTGTGTTGGGCCATACATAATGTACGCTAAGGATAGCCAATGAGCTAAAAAAGAATTGCAAAAAAAAAAATCTCATAATGTTTCAAGAAAGTTTACAAATTTGTGTTGGGCCGCATTCAAAGCTGTCCTGGGCTGCATGCGTCCCGCGGGCCAAGGGTTGGACAAGCTTGAGTTAGAGGTTTCTGCAGGATTACAGAGATGTGGGAACTTCCAGCCATTGACGTGTGGAGGTTAGGATATGAACTACTGTGAGGTGCACTTTCAGAGGTTGAGGCTAATACTCCTTTTCCTACTTCCCAAGGAGGTGAAGTTTCCTGAAGACAGTGCTTTTTTACATGTAGAGTTTTTTGTGGTTCTGTTACTCTGTTGTCTCCATTAGTCAAGGAACACGTTTTGCCATCAATATAATATTTAACAAACTATAGTAGTATAGTTTGGAAAGTAGAAACGCCCTTTTATGAATGTATTATTATATTTTTGGAGGCAGAGTCTCACTCTGTTGTCCAGCCTGGAGTGCAGCGGTGCCATCTCGGCTCACTACACTCTCCGTCTCCTGGGTTCACGCAATTCTCATGCCTCGGCTGGGATTACAGGTGCCTACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAAGGTTTCCCCATGTTGGCCAGGCTGGTCTTGACCAACTGAACCTGACCTCAAGTGATCCACCCACCTCGGCCTCGTAAAGTGCTGGGATTACAGGTGTGAGCCACCTACTTTCATTTCTTTCTTTCTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCATTGTCGCCCCAGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCGCTATTCTCCTGCCTCAGCCTCCCGAGTTGCTGGGATTATAGGAGTACGCCACCACACCCGGCTAATTTTGTCTGTGTGTGTGTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCACTGTCGCCTAGGCTGGAGTGCAATAGTGCGATCTTGGCTCACTGTAAGCTCCACCTCCGGCGTTCACGCCATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGAATTACAGGCTCCCGCCACCACGCCCGGCCTTTTTTTGTATTTTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGACTGGTCTCGAACTTCTGACCTCGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACAGTGCCCGGCCTTTTCATTTCTTAATTGGCATTTAGTTTAGCATAGTAATTTTTTTTTTTTAATTTGCTGCCACTTCAGCAGTTTTAGTGTTTAGATGTGGGAGAGGTTAAGTAAGATCTGTATTGCCCTATTATCTCTAAAAGTGGCTTGTCCCTGCAGGATAGTGAATGCTTGTCTGTACCATTGGAGTTACACATTTCATTGAGTTGATACCAGCAGATTTTTTTCAGGGAAAAATAATCCAATCTCATAACTACAGCACCTCACCACATTCTCCCTCTCCTAACAGTGTAGAGACTTAGATTTAATTGCACCTTTCCTTTCAATAGTTATTTCTGGTGGGATGTTGAAGAAAGCTAGTGGGCAAAGGATTCCGCTTGAACAGACACTGGTGATGGGCTCCCAGGCTTGGCGGTGGCTTGCTTTCTGCACTGCAGTAAAACCACGAGAGGGCATCTTTGGCTCTGGGATTAATAATTCATCTGTCTTCTCTGACCTGTGACCTTTTCTCTCCTTTCTCTTACCCTTTCCCGGTAG
Seq C2 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561:ENST00000529919:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000351527, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000382004, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000432299, ENSP00000433276, ENSP00000433334, ENSP00000434202, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains