HsaINT0042881 @ hg19
Intron Retention
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57556509-57559145:+
Coord C1 exon
chr11:57556509-57556627
Coord A exon
chr11:57556628-57558856
Coord C2 exon
chr11:57558857-57559145
Length
2229 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCTTACCCTTTCCCGGTAGTGT
3' ss Score
7.82
Exon sequences
Seq C1 exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTTCCATGATTTTTTGAATCTAGACTGGGCTGTTCTCTGTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
Seq A exon
GTGTGTATGGAAATATGTTTATTAAGAAGGAAAAATCTTACTTTTTAAGAAATATGTATTTTTATTCCTTTCATGTCATAGCAGAAAAAAATCTTTTTAAATACCTTTTTTCTTTATGGGTTGGTGAGAGGGTGGGAATTGGGGAGAATATTTATTTCAAAACCTGTCTTTCAACATTGTATATTTTGGACTGGCATAAAGTCTTTCATAGCTATAAGAGAGAAAAAAACCCATTGAGTCCAACAGAGTATCACTAATGCCTGTAAAACCTCCTGTTTATATAATGGTATGGAGAACTCTTCATTTTTATATAACTATCTTTTATTGTATAGATAGCACACATAGACCCTCTAGATACTTGGATATTTATCCTGAGTTGGAACAAATAAAAGGGTAAAAAGATAGTCTATTTAAAACAAGAGTGTCCAATCTTTTGGCTTCCCTGGGCTACAGTGGAAGAAGAATTGTGTTGGGCCATACATAATGTACGCTAAGGATAGCCAATGAGCTAAAAAAGAATTGCAAAAAAAAAAATCTCATAATGTTTCAAGAAAGTTTACAAATTTGTGTTGGGCCGCATTCAAAGCTGTCCTGGGCTGCATGCGTCCCGCGGGCCAAGGGTTGGACAAGCTTGAGTTAGAGGTTTCTGCAGGATTACAGAGATGTGGGAACTTCCAGCCATTGACGTGTGGAGGTTAGGATATGAACTACTGTGAGGTGCACTTTCAGAGGTTGAGGCTAATACTCCTTTTCCTACTTCCCAAGGAGGTGAAGTTTCCTGAAGACAGTGCTTTTTTACATGTAGAGTTTTTTGTGGTTCTGTTACTCTGTTGTCTCCATTAGTCAAGGAACACGTTTTGCCATCAATATAATATTTAACAAACTATAGTAGTATAGTTTGGAAAGTAGAAACGCCCTTTTATGAATGTATTATTATATTTTTGGAGGCAGAGTCTCACTCTGTTGTCCAGCCTGGAGTGCAGCGGTGCCATCTCGGCTCACTACACTCTCCGTCTCCTGGGTTCACGCAATTCTCATGCCTCGGCTGGGATTACAGGTGCCTACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAAGGTTTCCCCATGTTGGCCAGGCTGGTCTTGACCAACTGAACCTGACCTCAAGTGATCCACCCACCTCGGCCTCGTAAAGTGCTGGGATTACAGGTGTGAGCCACCTACTTTCATTTCTTTCTTTCTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCATTGTCGCCCCAGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCCGCTATTCTCCTGCCTCAGCCTCCCGAGTTGCTGGGATTATAGGAGTACGCCACCACACCCGGCTAATTTTGTCTGTGTGTGTGTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCACTGTCGCCTAGGCTGGAGTGCAATAGTGCGATCTTGGCTCACTGTAAGCTCCACCTCCGGCGTTCACGCCATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGAATTACAGGCTCCCGCCACCACGCCCGGCCTTTTTTTGTATTTTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGACTGGTCTCGAACTTCTGACCTCGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACAGTGCCCGGCCTTTTCATTTCTTAATTGGCATTTAGTTTAGCATAGTAATTTTTTTTTTTTAATTTGCTGCCACTTCAGCAGTTTTAGTGTTTAGATGTGGGAGAGGTTAAGTAAGATCTGTATTGCCCTATTATCTCTAAAAGTGGCTTGTCCCTGCAGGATAGTGAATGCTTGTCTGTACCATTGGAGTTACACATTTCATTGAGTTGATACCAGCAGATTTTTTTCAGGGAAAAATAATCCAATCTCATAACTACAGCACCTCACCACATTCTCCCTCTCCTAACAGTGTAGAGACTTAGATTTAATTGCACCTTTCCTTTCAATAGTTATTTCTGGTGGGATGTTGAAGAAAGCTAGTGGGCAAAGGATTCCGCTTGAACAGACACTGGTGATGGGCTCCCAGGCTTGGCGGTGGCTTGCTTTCTGCACTGCAGTAAAACCACGAGAGGGCATCTTTGGCTCTGGGATTAATAATTCATCTGTCTTCTCTGACCTGTGACCTTTTCTCTCCTTTCTCTTACCCTTTCCCGGTAG
Seq C2 exon
TGTGAAGTGAGGGGGTCTCTCTCCCTCCTTCTCCTTCCTCTGTGATTCACCTTCCTTTTTACCCTGCCCTGCGGCGGCTCCGCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAGGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAACGGCGCCACGTCTCGGCGCAGCTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACCCACTCATGGCCAACGGCACACTCACCCGCCGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-CTNND1:NM_001085460:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.908
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000351527, ENSP00000353902, ENSP00000354785, ENSP00000354823, ENSP00000354907, ENSP00000381996, ENSP00000382004, ENSP00000413586, ENSP00000431600, ENSP00000432041, ENSP00000432243, ENSP00000432299, ENSP00000433276, ENSP00000433334, ENSP00000434202, ENSP00000434808, ENSP00000435379, ENSP00000435494, ENSP00000435789, ENSP00000436323, ENSP00000436543, ENSP00000436744
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)