MmuINT0043559 @ mm9
Intron Retention
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84464427-84466294:-
Coord C1 exon
chr2:84466177-84466294
Coord A exon
chr2:84464716-84466176
Coord C2 exon
chr2:84464427-84464715
Length
1461 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTCTCCGCCCCCCTCCCTAGTGT
3' ss Score
9.74
Exon sequences
Seq C1 exon
CTCTCTCCTTCCTGCTTGCTGCTTGCTGAGGTGGCTGGGGTGCTTCCATGGTTTATCTGAGTCTAGACTGGGCTATTCTCTGTGCTAAACCAATCAATTACGGGCCTTCTCTTAACAG
Seq A exon
GTGTGTATGGAATATATATTTGTTAAGAATTGAAAATTATTTTAGGTACTTTCTTTTTCTTGGGTGTTTGGTGAGAAGTAAAGGGAATAGGAGAGAAAAAATTTTCCTCCTAGTTTGCCATTGAGCAGCATACATTTTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTTTTTGAGACAGGATTTCTCTATATAGTTCTGGCTGTCCTAGAACTTGCTCTGTAGAGTAGGCTGGCCTTGAGCTCTAGCAATTTATCTGCATCTGCCTCCCAAGTGCTAAGATTAAAGCTATGAGCTACCACACCTGGCCACAAAAACTTGAGACAAGATCTTGTTAAATTGCCTAGGCTGGCCACAAATTTATGTAGGCCAGCCACAGAAGTTGTGATCTTGCACCTTCTGAGAATGTGGGATTACACAGGTGGCTTGAGGCAAAGCCTTTTTATGCAGTGTCTGTGGTTCTGTCACTGTTGTTTCTATTAGCATGTTTTGCCTTCTGTCATATAGTATAATTTAGTGAGATCGAAAGACCTCTTCATACATGTATGAGGTTCTTTTGTCTTTATTTATTTATTGACTTTTAAGACAGGGTTTCTTTCTGTATATAGCCCTGGCTATCTTGGAACTCTCTCTGTAGACCAGGCTGGCCTCTAACTCATAGAGCTCCACTTGTCTCTGCCTCCCAAGTGTTAACATTAAAGACGTGCACCTCCACCACTCAGCTTATATCTCCATTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACATCAGAAGAAGGCGTCAGATCTCCTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCGTCAGAGGAGCAGTCAGAGCTGTTAACTGCTGAGCCATCTCTCCAGCGTCCCATATCTCCATTTCTTAACTGACATTTTAATTTCGTATAATTCATCACTACAGCTGCATTTATAGTGTTCAGGTTTGGGAGAGGTTAAGTAAAATTTGTGTTGTTCCATTATATCTAGAAGTAGCATGTCCCTTTACCAGGAAGTTAAAACTTTTATCAAGCAGATGCCTGCAAATATTTCCAGAGAAAAATAATCTAATTTTAATCCCATGCTATGGTCTCCCTGTCCTGTCAGCAGTGTAGAGACTTTGGTCAAGCTGCCACCCTTCTCTCAATGGGAGTTCATAGCAGAGTACTGAAGAGGGTAATAGGCAAGGGGTCCTCTTGACGCAGACACTGGTGATGGGCTCCCAAGCTTGGTTGGTGGTGGCTTGCTTTCTGCACTGCAGTAAAACCACAGAGGACATCTTTGGCGCTGGGGATTAACAATTCTTCTGTCTTCTCTGACCTGTGATCTTTTCTCTTCTCTCTTCTCCGCCCCCCTCCCTAG
Seq C2 exon
TGTGAAGTGAGGGGACCTACTCCCTCCTTTCTACTCCCTCTGTGGTCCACCTTACTTTTTATCCTGCCCTGCGGCGGCTCCTCCCCTTACCTTCATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTGAGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTCACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-Ctnnd1:NM_007615:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.911
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000042543, ENSMUSP00000064518, ENSMUSP00000065252, ENSMUSP00000107313, ENSMUSP00000107314, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107323, ENSMUSP00000107324, ENSMUSP00000107325, ENSMUSP00000107326
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGTGCTTCCATGGTTTA
R:
GCCATTGGCCATGAGTGAGTT
Band lengths:
352-1813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: