GgaINT1010765 @ galGal4
Intron Retention
Gene
ENSGALG00000007330 | CTNND1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZJ21]
Coordinates
chr5:16257038-16257862:-
Coord C1 exon
chr5:16257745-16257862
Coord A exon
chr5:16257358-16257744
Coord C2 exon
chr5:16257038-16257357
Length
387 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CTCCCTCAAATCATGCGCAGTGA
3' ss Score
5.37
Exon sequences
Seq C1 exon
CTCTCTTCCTCCTGCTTCCTCCCTGTGGTGGCTGGGCTATTTCTCCCATGACTCTCTACGTCTAGACCTGGCTGTCCCGTGCCTTTGCCAATCACACCCGAGCTTCCTCCTCTAACAG
Seq A exon
GTCTGTATGGAAGAAAATGATTTCTCTATCAAAATGTGTTCGCTGTGGTGTGCTAATTCACTGTTTTCCTTTGGGAGGGGATGTTGATGGGTCTAAGCCAGCGCCTGTCCCATATCAGTGGGCTGAGGACCTCCTAGGATGGCCGCAGGTCTGGGAACCCTGACGAGGACCTGAGGGTGGTGGTGGAGTGGCAGCTCTCAGAGGGGTTCGTGCGGTCCCCTCCTGGGGGTCCCGTCCCACTTTGCTCCTTTTTGTGGATTGGAAGGAGCTGTGTGAATATGCCTTGTTGTTGTTTTTTACCCTGTTCTGAAAATCTGTCTTAATGAAATCAGTCTCTTCTGACCTTTTTTTTTTCTCTCCTCCTTTCCTCCCTCAAATCATGCGCAG
Seq C2 exon
TGAAGAGTGGGGCTCCTCCCCTTCTGGGTCACTTTTCCTCCTCTCACCTTGACACCAAGCCAACTCTGCTTGTGCCTCCCTGTGCCCTTCGCCCCTTCCCCGCCCGTCCTGGGTAACCGTCACCCATGGACGACTCGGAAGTGGAGTCAACCGCCAGCATCCTTGCCTCTGTCAAGGAGCAGGAGGCGCAGTTTGAGAAGCTGACACGGGCGCTGGAGGAGGAGCGGCGCCATGTCTCAGCCCAGCTGGAACGAGTGCGGGTCTCCCCACAGGACGCCGGCCCGGGCTTGGCCAACGGCACACTCTCCCGGCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007330:ENSGALT00000011857:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGCTGGGCTATTTCTC
R:
AGACCCGCACTCGTTCCAG
Band lengths:
358-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]