BtaINT0045101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82307059-82308623:+
Coord C1 exon
chr15:82307059-82307175
Coord A exon
chr15:82307176-82308356
Coord C2 exon
chr15:82308357-82308623
Length
1181 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCTCTCGCCTCCCCGGTAGTGT
3' ss Score
6.38
Exon sequences
Seq C1 exon
CTCTCTCCTTCCTGCTTCCTCCTTGCTGTGGTGGCTGGGATGCTTCTCCCATGACACTTTGGATCTAGCCTGGGCTGTTTTCTGTTAAACCAATCAGTTGCGACCTTCTCTTAACAG
Seq A exon
GTGTGTATATAAATATGTTTATTAACAATAAAAAATTAAGTGCTTTTTTTCTGGAGGTGTTGATGAGAGGGTGGGAAATAGAGGGTTTATTCTGAAACCCACCTTTCAACATAGTACATCTGGGACTCCCCCAGAAAGTCTCCCACTGCCAACTTGTAAGAGAGAATCCCTAATCAATCCAACAGTGTAACTGCGGTGCCCCTCCACCTATTAGCCAACTCGGTAGTTCACGTCACAGGGTATGGGGCACTCTTCAGTTCTGAGTAACTGTCATTTGTGGTGGTAGTTACAAATCCTCTCTAGGTGCTTGGATGTTTGCCTTTAGTTGGAATAAGTAAAGATGTAAAAATGGAGCCTATTTAGAGCTTTCTTCAGGATGACAGGGATGTAGGAAGTCCCAGCCATCGACTAAAGGTTAGTCTACGAACTGCTAGAAGGGATAACTTGATTATAGTTTCATATGATGGCTCCTTTTCCTACTCCACAAAGAGATGTGGAGGCCACTGAAAATGGCTCCTGTTTGCACGTAGTCTTTTTTATTCTGCTGCTTTCTTGTCCGTTAGCCAAGGCACACATTCTGCCTTCAATATTGTAGTACAGTTTTGAAGAGTAGAAAAGCCCCTTTATGTATGTACTCAATTTGAGGGCCTTAGTTGTATTTCCTGCCTTTGACGGTAGGAATATTTTTTCACTTCTCCCCCTTCTTGGTATTATGACTTGGCAAGTTCCTTTAGTATGTTTTGTCACCACTGCCGCAGTTTCGGTGTTCGGATCTGGGAGACGTGAACTAAGATCTGTCCTGCCCCTCTGTCTCGAGAGGCGGCTTGTCCCGCCGGACCCTGAATGCTTGTCTGTGGTGCGGAGTTGCAGCTTCGCTGAGAAAAGGAGCCTGACTTGAATCTCCTGTGTGAGCAGTCCTGAGCCCCGTCCTCTCTTACTGACCGTGCAGGGCACGGGGCTGGTCGCACCTTCGCTTTCAGCGGCGGTCCCAGGCGCTGTTACAGAGGGTCGTGGGCAGAGGACCCTGCTTGTGCAGGCGCCGGTGGCGGGCCCAGGCTTGGTGGCGGCTCTCTCTCTGTGCTGCAGGCAGACCGCGAGGGGCATCTCTGGCTCTGGGGTGAATCGTGCACCTGTCCTCTCTGACCTGTGCCCTTCTCTTCCCTCTCTCGCCTCCCCGGTAG
Seq C2 exon
TGTGCAGTGAGGGGCCTCCTCCCTCCCCCCCTCCCTCAGTGGGCCATCTTCTCTTGCCCTGCCCTCACCTCCATGGACGACTCGGAGGTGGAGTCGCCCGCCAGCATCCTGGCCTCCGTGAAGGAGCAGGAGGCGCAATTTGAGAAGCTGACCCGGGCGCTGGAGGAGGAGCGGCGCCACGTCTCGGCGCAGCTGGAGCGCGTCCGCGTCTCCCCGCAGGACGCCAGCCCGCTCCTGGCCAACGGCACGCTCACCCGCCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411:ENSBTAT00000043778:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.923
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTTCCTGCTTCCTCCT
R:
CCCGGGTCAGCTTCTCAAATT
Band lengths:
272-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development