HsaINT0042899 @ hg19
Intron Retention
Gene
ENSG00000198561 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:2515]
Coordinates
chr11:57573933-57574455:+
Coord C1 exon
chr11:57573933-57573950
Coord A exon
chr11:57573951-57574386
Coord C2 exon
chr11:57574387-57574455
Length
436 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCCCTTTTTCATTTTTGTAGGGA
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATGAGTGGTTCTCCAGAG
Seq A exon
GTGAGTGGAGTCTTTTAAGGTGCTTATCTACTTCTAATTTGCATGTTTTGATTTTAGCTTCCCTAGTATGTCCTTGCCTAACCTTTCCCTGTCTATGCATGTAGGAAAGTTCAGTTGAGGAAGACACTGAAACAAGTTTAGCTCTTTGGAGCTAATAGCTCACGGCATGCTGTTTCTGGGCAGCAGTCCCCATTATCAGAACTCAGGACAATAGCATCAACAGTGGTCATCCTCATCTTACCTATCTGCTGCCTGTTTTCTATCCTTGTTTCTGAATAGTCCCCTGCTGGAACAAGTTGCCCTCACCTGCCCCTTTTCCCCTCGTGGTGCATCTGTGATCAAAAGGTTCTGACTGAAGGATGAAAAATGTGCCAGGTGGAATCTTTTCTTTTTTAAACTGGCTTACCCCTTTTCCCGCCCTTTTTCATTTTTGTAG
Seq C2 exon
GGAAAAAACCTATAGAGGATCCAGCAAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198561-CTNND1:NM_001085466:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(2.5=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)