MmuINT0043537 @ mm9
Intron Retention
Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84452181-84452706:-
Coord C1 exon
chr2:84452689-84452706
Coord A exon
chr2:84452250-84452688
Coord C2 exon
chr2:84452181-84452249
Length
439 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTTTCTCCATTTTCATAGGGA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATGAGTGGTTCTCCAGAG
Seq A exon
GTGAGTGCAATCTTTTAAGGCGCTTGTCTCCTAACTTGCATGGTTTGGTTCTTACCTTTCTTAATATCTCTTTGTCTAACCTTCCCCATGGATGCATGTAGGAAAACTTAGTTGAGGGAAAGCATTGGAATAAGTTTAAATCTTCTGGGTTGTGGTTTTACATGTTGTTTCTGGGCAGCAGTCCCTTTTATCAGAACTCAGTTAACAGCCACAGGAGTGGTCATCCTTTTGGACAGTCTACTGCCTGTTTTGGTCTTCCTTGTTTCTGCATCATCCTGTTGGGACAGTTATGTGTGGGGTTTCTCTTCTTTTGCCTCTTTTGATGCTGCATCTCTGATCTGAAGATTCTGACTGAAGGATGAAAAACTGCCAGGTCGAATCTTTCCTTTTTTAAAAAATTATTTCCCCTGTTCTCTCCACCCTTTCTCCATTTTCATAG
Seq C2 exon
GGAAAAAGCCTACAGAGGATCCAGCAAATGATACAGTGGATTTCCCTAAAAGAACTAGTCCTGCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101-Ctnnd1:NM_001085448:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(2.5=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: