HsaINT0067771 @ hg38
Intron Retention
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127313441-127318127:+
Coord C1 exon
chr9:127313441-127313559
Coord A exon
chr9:127313560-127318062
Coord C2 exon
chr9:127318063-127318127
Length
4503 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGATGTTTGGACTTTTCCAGGGT
3' ss Score
7.26
Exon sequences
Seq C1 exon
TCCATCAGAACTACATTGGAAACGATGCCGAGAAGAGCCCTTTCTTCTTGTCCGTGACCCTTTCTGACCAAAACAATCAACGTGTCCCTCAATACCGTGCAATTCTTTGGAGAAAAACA
Seq A exon
GTAAGTATATGGCTCACACTTGAAGCAAAATTTATGCATCAGTTTCAGGAGATAACCCCTGTGCTGTGGAACTGTGTGCCAGTTTCTTCCAGGGCATGCCTCATAGTCTTCTCGTGATTCACCTCTGAGAAGTTGACAGTGCCTTTGCCCAAAGCACCTTATTTTCTGCACCAGGAGACTGTTTTCTGGCCTTTTGAAAAAAAAAAACTTATTTATTTTATGTTTGCTAATTACCGCATTCTAGTCTCTTCTGGTTTAAATATTTTCTTTGGGATGACTTTGTCTCTTTTGGGCAAAGAATCAAGCCTTTACAATTTTTTTGCCTCCTCCTGCTCCTCTTGTGGTTGGTATTTGTGCACATGGGGAGAGGGCTTATGAGACCTAATGGTCACAGAAGAGAACTGTGGATCCACATGGGCCCTCTGTCTGACTTCCGTTGTGGAGTGACTGATCCAACCTCTGAACTCGTGACCACGGAAGTATAGTTGATTCCTCTGGCTCTTTTGGGTCATTGGAAAGCATTTGCCCCTGAAACCCACAGTGCCAGCTATTTGCCTTTTGTTGTAAAGTCACTCCTTGTCCTGATCCCAGGTCTCCGCTAGTCTCTGAATCTCTTAGAAGCTCTCCATCCCTTCCTGGGGCACATCCGCTATGAGCTATAGGTCAGATGTGAGGAGGCAGGACCATTGCCATAGGCCTGTGTGTGTCATACTTCTGGTCATTAACATTTGCAGCCACTGAGTTGCTACCCTTCTCCAAGTTCAAACCAGGTGCTGCCTGGACTTAAGATTCCCGTGCAAGGCCATGCCCGGGAAGGGGCCTCTGGTTCAAATGCTCTGAGGTGCCTCCAGGTCTTCCCTTGACAGATTTACAGCATCCCACAATGCCTTCAAAGCCTGTCCTTGGCATGGGGGCATCAAGAGCCCTGGCATCCACCTCTTGGCTGGCCTTTCTTCCTTCACCCCTTCCTTCCTCCCTCCCTCCCCCTCCTTCACCCTCCCCCTCCCTCCCTCCCTCCAAGGCAGGAGAGGGTGGGTTTCCCCCTTCTTCTACTTTTCTGGAATGGACTTTCTCAATGTCCATATCTTCTTCCTCCAGGAAGTAGCAATCACATCCTCACTGAGATGGCTGCCATGTATGAGGAGAGACAGAGTGGGACAAATGCAGGGGGAACATTTGCTTATTTTAATTTCCAAAGATACTGTCTATATGACATTATAAGTTGTGATAAGCACTCTGAAGACAGAGAATGACAGAGCATGCTACAGGAGCCCCACTTAGATGAGACAGTTTAGGGAAAGCCTCCTGAGGCGGCGCCCAGGAAACAGAGGCCTGAAGATGGAAGGGAGCCAGTCATTTGACGAGTAGAAGGGGAATCAGAGAGTGTTCCAGGTAGAAGGAGCAACAAATGTGAGACAAACAAGGGTTACTCATACCTGGTATTAGAGAAGCCAAGGAGGTGGAATTTAAATCCCAGGACTGCTGTGAAGGCAGCATAGGGGCAGGGCATGATGAGAAGTGCCAGTGCCTTCACCCAACACCTCTTCCCTTGGCCTTCAGTTATGTGCCAAGGACAATGAGAGGGTTCTCAGCTGTTGATGGAAGTGCTGAAGGGAGGGAGGAACTGAGAAATCAAAACTGAGCATTGGCACAAGGGGTCAGTTATTAAGCCCCTCTTGGCCTGAAACTAGTGCTAGAGGCTATGGGAAGTCCACAGAAATATGTGATTCAACCCTCGCTCTCCCAACTGCCAGCACACATCTTCTAGGTTATAAAGCAGTTAGAAAACTAGCTAGGCCCAGCACAGTGGCTCATGCCTGTAATCCCAACATTTTGGGAGGTCGAGGTGGGAGGAGCACTTGAGCGCAGGAGTTCAAGACCAGCCTGGGCAACATAGCGAAACCTTGTCTCTATGAAAAATAAAATAAAAACTTAGCCATGCATGGTGGCTTACACCTGTAATCCCAGCTCTTTGGGAGGGTAAGGCAGGAGGATGGCTTGAGTCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTGTACCACTGCACTCCAGCCTGAGCAACAGAGCAAGACCCTGTCTCTACAAAATCAAAGTAAGAAAGATAAAAAAAAAAAAACTAGCTAAACATATAACTCTACTCTACACAGTCTTGCATATCTCTACTGTGTTTCTTCTAAATACACAGAAATGGCTCACACAAATAAAATATGAAAAATGATTTGTACTTATTTTGAAAATTATATCCAAACAATACAGCAAGTGAAAAGAATCCAACTACTCAGAGATAATCACTGCAACAGGCTTCTAGACATCCGTCCCTGTAGACACACACCTGCACACACACACCTGTTACACAGGGTAATCTTCGATGTGCACTTCTGCATCCTTGCTGTGCTCACTGGGTGTAGCCTGATACATACATGCACTTGACTCTACCTGTGCATTTGATGCTTCCCCTGAACACAGAACCATTTTACTTAAACATTGACTCTGGAAGCTACAAAAGGGAGGAGATGAGGAAGAGCTTTACCAGTTTGTGGTGAAGAAAAACACAAATCCACAATCCCAGGAGCCCTGAGTTTCGCACCCACATAGGCAGCTCATGAAGGTGTCACTGTCACCCAGTGCAGCACTGGAGCCCTCTGCTGTGCCACACATTCCCCCGAGCTGCCCTTGGCTTCTCTTTAAAACTGCCTTTGGGCTGGGCAGGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTCAAGGCAGAAGGATTGCATGGGACCAGGAGTTTGAGACCAGCCTGGGCAACATAGTGAGACCCTGCCTGCTACAAAAAAAAAATAAAAATAAAACTGCCTTTGGAGTGTTGGGTAAGAAGAAAAGGTAGTCAAGGTAGGATCTAAGCTAGAGGGGCAGATTCAAGACCATCTCTTAGACAGGGAATGCAGTGTAGGCTGGAGCCAGTTAAAAAGCAAAGCCACAGAAGAACTCGGGTTTCAATGGGAAGGACCTGTAGAATCAGAAAACGTGTATTTCTATCGTAATATTCATCTATAATTGGAAAAAAATTTAATCTCTGTAGCACAAACTACAAAAAGAAAAGCTCAGCCCAGTTTCCTTGGCTAATGGAGAACCCATAAGAAGGGCTCTCTCTAGTGCAACTTCTCATCCTCAGCTCCAAAGACATCCTCCTCCCTGGGCTGGAGAGGGGTGAGAGTAGCAGGTCTCCAAGGATGTAGTTATGAAAGTTTTGTTTATGCAACGAGACCATGGGCTTGGAAAGCTCAAAGAACTCCTCTCCCTTGCCATTGTTCAGAGCTTGGACAGATGAATTGGCAGATGTGTCCCAATAGCACAAGAAAAATCATATTTCTTTGCCCATTCCCTAAAAGAAATGTTCTTACCCTCCTCTAGCCGTTTGTGATGACAATTTTATTACTAATCAAAGTCAGGAAGAAAGTTTTAAATGTGTGGTATATGATAATCCCTTTTGCTAACTGTGTAGTGTGAACCTTTGTGGATCCTAAATCTATGTCACCTCTTCTTAGACGATTAGGAAGAGAATAGCACTCATCTGTTCCTGGGTGGTGTGGACGGGAGACTGAATCACTTAGGCAATTCTTCATTTCCTTTTTAGTCAAAATATATTCATTGAGTATTCCTATAATGAGTCACAGTTGGTACTCATTTAGGAGAAAGGAGACTTTAAATAAGAAAACACAGATAAATGTAAAAGTGTGCATTATGAAAATGTCTCTGAAAGATTCAGGGGATTTCTAGTTCAAAAAGTTTTTGACTGGGAGACATTATTTTTGGGTCCCATTGAACATGTGGAGACTGTTGTCTTATGGTCTTTGAGGCTTATTTGATGCTTGGCTCAGAGACCAAATTCCCAGCCGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATTAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCATGAGCCGAGATCACACCACTGCGCTCCAGCCTAAGCAACAGAGCCAGACTCTGTCTCAAAAACAAAACAAAACAAAACAACAACAACAACAACAACGAAAAAACAAATTCCCTTCTCATCTGGTTCAGATGGCTCAAGTGCTCTCCATAATACCTAAGACACTGAAGACCTGTATGTTGAAGGCCATGCTGAAATCCACACATGTTGGGGTGGAGAGATCCTGGAAGTTGCTATCAAACCTGAGCAAGATTGTTTTCAGTCATAGAATGTGTTTATTCATATACATTCCCCTTGAGGAGAAAGAAGAAAGACTGGGCATGGCTTTCTTTTGAATGACCCGAGAGGCTCTTTTGGAGAAGGAAGTTGTAGAACTTGTCACTGATTTGATGTTTGGACTTTTCCAG
Seq C2 exon
GGTACCCAGAAAATATGCCTTCCCTACAGTCCCACAAAAACTCTTTCTGTGAAGTCCATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895:ENST00000373386:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development