GgaINT0125898 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10418114-10419001:+
Coord C1 exon
chr17:10418114-10418232
Coord A exon
chr17:10418233-10418936
Coord C2 exon
chr17:10418937-10419001
Length
704 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTTTTTTTTCCATTTTATAGGGT
3' ss Score
10.7
Exon sequences
Seq C1 exon
TTCATCAAAATTATATAGGTACAGACTCAGAGAAGAACCCTTTCTTTCTGTCTGTTGTACTTTCTGACCAAAATAATCAGCGTGTTCCTCAATACCATTCAATTCTTTGGAGAAAAACG
Seq A exon
GTAAGAAATAAATACTTAATTGCTGCTCTGCCTTTTTTGTTCATCTGTTTTCTTGTTTGTTTTAGATGCATTGATCATAGACTTTTTTTGCTCTCTTCAGAATTTCAGTATTTAATATGTAGTTTTTATTTTGTAGGAGAATGTATAATTCTACCCTAGTAGAGAGCACTAAGCTAACTTAGTAGATAGGTTATACTAAACTTCCTAACAGAAATTTATGACAGTAGATATTTTCTAATTTTTCATACATGGAGTTCTGCATTATTTTTAGAGATGTCGCCTAAATTGTTTTTGATTTATGTTTTGTAATGAGTTTATGCAGTGACTTTATAGTACAGATATACTGATATTTTTATATGATACTGAGAACATAGCCAAATGTGATACTGGTTTTATTGATATCTTTTTAGGATTTTTTTCTACAGACCTCTCCATAATGACCTTTATCTAATCAATTGAATTAATACCTTTTAGTACACAGAGTTGTACTGTGACTTCTCTACATGCCATTGTAGTCAGAACTGAGTAAGAACAATTTTGCATCATCCATGCCTTTTCACATTCCGTTTATTTCAGTAGAAAATACAGCTTAGTAAAGCTAGTATGGTCTTGATCTTTGCTTATCAATATTCCTATTTTAATATATAGAAAAATCAGTATAACCTGCAATGCCTCTTTGCTTTGTTTTTTTTTCCATTTTATAG
Seq C2 exon
GGTACTCAGAAAATATGTCTCCCTTACAGTCCCACAAAAACATTATCAGTGAAATCTATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]