RnoINT0064017 @ rn6
Intron Retention
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12097576-12103169:-
Coord C1 exon
chr3:12103051-12103169
Coord A exon
chr3:12097641-12103050
Coord C2 exon
chr3:12097576-12097640
Length
5410 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGGTTCTTTGATTCTTCCAGGGT
3' ss Score
7.81
Exon sequences
Seq C1 exon
TCCATCAGAATTACATTGGAAATGATGCCGAGAAGAGTCCCTTCTTCTTGTCTGTCACACTCTCTGACCAGAATAACCAGCGTGTCCCTCAGTATCGTGCGATTCTGTGGCGGAAAACA
Seq A exon
GTGAGTACCTGACTTGTGTTTGTTCTTTGCTGTTGCTTGACCCGCACACGTGCTGGGGGACCTTGCAGTTTGGCCCCATCTCCATTCAGTTGGTGCCTTTCAGGTGATTCCTCTCATTGTATGGTTCAGAATCCCACTGTTCTGTGCAGGGGCCTCCAAGCTTACCAACAGCTTCTCCCCATCTCTAAGCCACGCTAGACACAGCCACTTCCTAAGTCTTGGCCTCTGGGAAATAGCAGTATATTCTATGGAACATATTACTTCATTAATCTTAGCTTACTTTTGGGGTTGTTGTTGTTGTTTGAGACCAGGTTTCTCTTGGCTGTCCTAAAACATACACTCACACCCCTACACACCTACATGTATACATAAATGTATAGCAGTAAACTAACAATTTCAGATGACCTAGAAAGAAAGGCTGTGGATACAGCTTTGTTGATGGGGCATGTGCCTAGCTTGTGTGAAATCCTGTGTCCGATCCACACTCTGCATAAGCCAGATGCAATGGCGCATGCCTGGAATCCCAGCACTTGGGAGTTGGGGCAAGAGAATCAGGAGTTTCAAGGCCACTTACACATAAGTTTGGGATATGAGGCTTTATCTCACAAAGAAAAGGCCAAGAAAAAATTTCTAGGAACCACTACTATTCAACAAATTACGATTAGGTACTTCTAAAATAGTGAGCTAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCCGACTACTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATGAATACAAAAAACATTAAAATAGTGAGCTAAAATAATAAGAAGAATAAAAACTAACATTTATTATGCTCTTACTAAATGCTAGATTAGTGGTTCTCAACCTTCCTAATGCTGTGACCCTTTATCATGGTTCCTCATTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAATGGTTCCTCATGTTATGGTGACCCTAACCATAAAACTATTTTTGTTGCTACCTCCTAACTGTAAGTTTGCTACTGTTGTGAATCATAATGTAAACATCCATGTTTTCTGATGGCCTTAGGTGACCCCACAGATATCGAGAACCACTAGATATATTCTTAACTATGCAAATCTCACCCACTGCTATTGCAACTGCAGAAATAAAATGGTCTATGCACAGACCAAGATACTCCAGAGCTCAGAGACCAAGGTGTCGCCACTGTACGTAATTCACTCTGTGTGTAAATCTTTGACTCCTGTCTCCCTTAGTGTCCACACCATGTATCACAGCTCCAGGAGTCTGTGTTGAATGAATAGTTAACTCCAGGACCTAGCTTAACAACTCTGTCTCCCGCCGCCCCATTTAAGTAAACTTCTATAGTATTTTCAGGAATTGATCTTTTTCTGAAGCGATTTTGGGGTAAAAATCTTTTTTGGTGTTTCTCACTCACTCATTTCCATCAGAGGTGTGTCCTTAACAAGGGACTTGAGTGAGACCAAGGCTTACAGGGATAGGTGATTTCCAATGACTCAAAAGATTTGAAAGGACCAACACATCCCCTCCCCGTGTCACCACCAGAAATGGGGTCATAATCCTGCTTCCAGCACTCCTATGTGACACGCAGAGCCATCAGCGCATCTAGAAGCCTCGTGTGAGTGGCGGGGTTGTGGGGAGACACACACGCAAGCGAGTGTCCATTGTTCTCATAGTGAAAAACTTCTGTGCCTTCATCCAGCCCCTCACCCTCTACACCAGGCAGATGACTTTCTGGTTTCTGGGTTTTTTAATTAAGTAATTAAGTAATTAATTAATCAATCAATCTGTTTTTGCCCTATGTGTGCTCATTACAACATTCCAGACCCTTCTGTTTTCAGGATCCTCCTCAGGAAGAGTGGTTTGGGGTAGATAATTGGACTTTCCCTCTTGCTGTTCCTCTAGCAATTGGTCTCTAGGTATATGAGGAGGGGCTGCGACCTCATGACAGCAGAACACATTTGAGTAAGAAGTTTACATATAGAATTAATTATGTGCAGAGGGATGCATACCCCCCCCCATGACCTCTGGTAGAGGACTAGTGGGTCCCTTCTGGTGTCTTAGGTCCTGGGAAAGCTTGTATCCTGAAGTCATGGGTCTTTCTATCTGACCCTTGTGAAGATCCTCTTTGGCTGTCTCAGGTTTCTGTTCACCTCTGGGCCTCAGCTCTTTCACTCACCCCGGACTCACCCCTGCAAGCCATGGCCTTAGTCCCATGTCTGTATCTTGCCAGTCATCCATGCTGGCAGCTATTGCCCTTCACCATGGCTCCACAGGGGCCACATGGGCTTCAGACTCCTATGAGAGGTCCTGCCTAAGAAGAAGCCTCTTGCCCCAGTGCCGTGCTGCCACTACAGGGAAAACTGCAGTTTCACCATGCCCTCGGGGTCTGGCATCTAACCCCATAGCCCCCCTCTTTTCCTTCTTTCCTTCCAACCTCTTCTGCTTTCTAGAAAGAATTTCCTTGATGTCCTGTCTTCTTTCTTCTTGACATCACCTATGTTGGTTGGTGGGTATTCAGGAAGGGCGGGCAGGACAAATGCAGGGGAAAGCTGACTTGTTTCCATTTCTGAAGCAGTTGTCTGTATTAATAGCAACCATGGTCAGCACCCTCTAGGCAACAAAGCTAATGGAGATACTGAGACCCCGGTAAATGAGGTCAGAGAGAGCTTGCACACGAGGATCTGAAGGATAAAGGCTGTAGGCACTGGCAAAGTAGAACAGGAGATGAGGAGTTTTCCAGGCAAAAGGAATAAAGATTAACAGACAATAAATAGTATTTTGTGGAACTTCTCTTGGCCACGGTTAGAGAAGTGTGAGTGTGACTACCATGAAAGCAGCCCAGGGCTGCCCATCAAGAGCATTAGCCCCGTCCACTGACAAGTGCCCATGCCTTCATCTAAAGCCTCTCCTGTAGATGCTAAACCTGTGGGCCAACAGCAGGGTAAGCGTTTGCTCCTAGCTACGAATGATATATTAAAGAGAAGTGAGAAAAGTAAAGTCAGAATGTTGACAGAAGCCAGTTACAAAGTTCCAGGAACTGGAAGCTAGCACTAGGGGTTGTGGGAAGTACAAATATGAGGCTCCGCCCATTCCAGTGCACAAAGGTTTGTGCTGTCTCAGGTTAAATGCAGTTAGAACAGCAAAATGTATAGCCCTACTGTAAGCGGCCTGTTCTGTGTATATATGCTTGGGTTTTTAGGTGTTGGGAATGGAACCAGGGTAAAGCCCAGCACTGTGCTGGCTCCCGTCTAAACACATGGGAAGATTATATATAGAAACAACTCGAACTCACTGGAGAAACTCCATCCAGACAGTACAGCAGGTGAACAGAGGAAGATCAACGTCTGTCTGCTCAGCCTGTCCCAGCACGCTTCTGGGAGTCTCTGCAAGTGCACACGGGTGTGCAAAGGCATGTGCACTCACATGTACACATGCAAGCATGCGTGCATACGTGCACATGTGCATTATTACATGGACTAGGTGACACCCAGCCTGTTCTTCTGAGCCTGCACAGTGCTTGCCTCTGGTTGCCTGATACCTACTGACTTCTACTTATGGCATTTGATGTTTCCACCTGAAAGTAGGGTGGTTTTATCTGAGTATTGACTCTGGAAAGCTGTAAACAGGAGATGGGAAGAGAGAACTTTGCCAGGGTGTAGTGAAGAAAACCGTAAGTTCAGAGTCTGCAAGGCCCAGGCTCCTGTGCACATAGTTACTTGTGAAGGTGTCACTGTCACCTAACACAAGCTGTTCTGGGCTTGCCTTTAGAGTCGCTTCTGGTGTGTTTGATGAGGAGGTGGGGAGGAGGAGGCTAAGCAGAGGCACAGAGCTGAGGCACCTGGAGCAGGTCAGCCTCCTATGTAGCTGAGCAGCCACAGGAAGAGCTCAGCTCCGGGTAGTGGGACCTGGGAAGTTTAAAAAGTGAGTTTGACGGTGTTTCTAATCTGTATGGCAAAGGCAGGTTGGTCCAGTGAAGAGCCCAGGAATAGGGTAGAGGGCCCAACATGGGGATAATTGTTCATGACCAGTGGCGAGAGTCGGGTCTCTAAGTCCATTGGTTTCTTTACTAACAGAGATCACAGGCTGGAAAAGGCCAAGGACCTCTACCCCCAGGCTTGATCATGGCTTGGACAGAGAAGCTGATAGAAGTGTCCCACAACACACAAGACAAGTATTTACTTCTTTGTTCATTTCCTGCAAAGATGTCCCGACCCTTTCCTGGTGGTTAGTGATGCCAGTATTATGATTTGCCAGAATTACAAAGTAGCCTTTGAGTGGGTTCCATTTGATGACCTCATCTGCTCTCTGTGGAGCTCCTGTGTAGGTGGTGGGGAGAGACGGTTAGACCAACTCATCTGGTCTGGGTGGTCTAGAACGGGACCATTGGCCAGCTCCTTGGTCCTGTGCAATAGATAAGAAATTATCCAGCCCTTCCTATGAGTTAGCACAGTGAGTTCTTATTAAATGAACAAATGACTTAAATAAGCCTGCAATGGAAACATTAGGAAATCCTTGCTGAAGATTTGGGTGACTTCTGGTTAAGGATCTTTGACCTGGTGACACGGTACTTGAGTCTCATTGAACAAACACAGACTTTTGGGTTGTTTGGGCTTTAGTTGATTTTTAGCTCAGAGACCAAACAAATCCCCTTTCAGCAGATTAGATGGTGTGGTTCGTGGGTTTCTGTTAAGCAGAGATGGTGGCATCCATGAAAAGAGGAAGGTCTGTGTTGGCTCACAGCTGTGGGGGCTTCAGACCTTGGTCATCTGTCCGCGCTCTGGAGCTGGTGGTGAAGCGATACCTCACAGCAGGGTCTGTGGAGCCAGACGACGCTGTTCACCTCATGGCCACTTGGAACCAAGAGACCAGGGGTCTACATCCCCATTTGAGAGCACATCACCCCAGTGACCTGAGACTTCCCACAAGATCCAGCTCTGAAAGCTTCTAGCACCTTCTAATAGTGACGCAGACTAGTGACATAGTCTTTAACACATGGGCAGTTGTGTGTTTTATATCCAGACTGTAGCAGATGGCTCAGCTGTGCACCATGGCACCAAGATGCTGAGGGCTGATATGTTGAAGAGTTCTGCTCAGAACCAGAAATATGTAACCAGAGGGAGGGTGTGGTCAGCCGGGGCAGGGTTTTTTTTTTTTCCCCTATGTAGAATGTTTATTTCCATATCCACCCTTAAAGAAGAATTCAAACACACAGGCCTGGTCCCACCACAGTGAGCAGGTGAGGCTCTTACGAGGTGAAGGGTGCTGGACTCATCACTCACTGGTTCTTTGATTCTTCCAG
Seq C2 exon
GGTACGCAAAAAATATGCCTCCCCTACAGTCCCACCAAAACGCTGTCTGTGAAGTCCATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044:ENSRNOT00000082696:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]