HsaINT0107588 @ hg38
Intron Retention
Gene
ENSG00000105357 | MYH14
Description
myosin heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr19:50252639-50255318:+
Coord C1 exon
chr19:50252639-50252753
Coord A exon
chr19:50252754-50255219
Coord C2 exon
chr19:50255220-50255318
Length
2466 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CATCTGTCCTCACTCCCCAGAAC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTCGACTACAAGGCCAACGAGTGGCTGATGAAAAACATGGACCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCACAGACCGGCTGACGGCAGAGATCTGGAAAGACG
Seq A exon
GTGAGGACCCACTTCCCCCACCCCGGCTCTAGGGGTCTGTGCGGCCATTCTCCAAATCCACAGCGTGAGCACCTTTGTTTCAGAGGCGGAGGTCTGAACCTGAGTTTTCTGCTCAGACCCAGAATAGCCAGTGTCACAAATAGTATTTCAAATCAGTGATGGATGGATCCATAGATTAATTGATTGACTATTGATTTGATTGATAAGCCAGCATCCTTCTCAAGGATAAAGCACTCCGCCTTAATCAGAAACGTGGCAAAGATACCCACTAACACTACTGTTAAACATCGTTTTTTTAGCAATACTAGCCTATGCAATCAGACCAGAAAAAGTATGAATATCGAACAGGAAGAAGTAAACTTATTATTTTTAGATGGCCTGTGTTCCCTAAACAATTAGGAGATTTGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTTGGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAGTACAACAATTAGCCAGATGTCCTGGTGCATGCCTGTAGTCTCAGCTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAATCTGGGAGGTAGAGGTTTCAGTGAGCCAAGATTGTGTCACTGCAATCCAGCCTGGGTGACAGTGTGAGACTCTGTCCCAAAAAAAAAAAAAAAATTCTACTGAGAAATAATTTATAACAATAAGAGAACACAGAATGATGATCTTTTGCAGGTCAGTCAACTTTTAGGCTTTGCTTTCTTTGTTTTCTTACAAAGTTCCCTTCACGCCCCCAGGGAAGAAGAAAGAAAAAACAGACTGAGATACAGTTTTGGAGGGCTTTCCTGCCCCCAAAAGGCCCCCATGAGTGTGACTGTCTTTTTGGATTGACACTTCTAGGGGTCATAGGCAGAGATGCCAAATGCCCTGTGGTAGGACTCTGACCTTTTCCAAGCCTTTTCTGCCACTGCCCCTGCCCCCCCATCCTTAGAGGAGGTTTGAGAAATGGTTTTAGAAAGCTGGCAGAACTGGCATCCTGTTTTTTCCAGGTTCCAAGTTTCTGGCATTTGTCAGTTTGCCTTAATCTTTTATTGACATGAAAAGGTAGCTGTAGAAATACCAGTCCATGCAATTTGGCAAGAAAACAAAATGAGCGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGACGGGTCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCATCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGGGGCTGAGGCAGGGGAATCGCTTGAACCCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAGGAAAAAAAAAGAAAACAAAATGAGCAAGGTGAGTGGTTCCCAAAACACACTCACAGAGCAAAACAGCATGGAGGGTCTTGATCTTGTGAGCTCATGCTAGAAAGATAGATTTTATTTTTATGTCTCATATAGTATTTACACAAGGAGATTGGAAAGCAGAGTTTGATGTTCAGGAACAGAACCAGATTATGCTACGAGAATCATCTCCCGGCTGAAAATCTGCTGCCCTTTTAAAATATTTGTGCTGTCTTCATAAACACATGATTCTCCACAGTGAGCCCTCATTTGTCACACTCTGTGTGTGCCTGACTCTCAGAGGGTTCCAAAAGAAAAAGTGGAAGCTGCAAAACCTCCTGGCTCAGCCTCCCGAGTAGCTGGGGAGCTGCCATAATGTCACTTCCTCCATAATCCTCCTAAACAAAGCTAGTCACAAGGTCTTCCCAGATTCAAGGAGCTGCAAGACACAGGCAAAGGGTGTCAATACAGGGGAAAGTGGGGAATCGGGGCCATTTTTGCCCAATCTCTGCTAGAGCTGCTTTGAGCCCAGAATTGGATGCCCAGCATCCTGACAGCCCAGGGAAAAACGGAAATGAGATTAGCTCTCCTCTGAGAGGCAAAAACAACAAGTGGCCTGGGAGCATCAAGTTCATTCTTGAGCTTCCTGGCAGCCAGAGCAAAAAGGGCAACCTACTAAAACAGACACAACCTCTAGAGGGAGAGATTTTTTATTCTTTGCACTGAATTCTTACAGAGGACATTCGTCCTTTTGGCCAACAGTGTGTGGATACAAAGATGAACAGGAGTTCAGAAGTTTATGGCCAACATTCTGGTTTTCCATCTTGCTTTGCTCTGTACTGTTGACTAATAACCCTCTCCTCTTTTTCTTCCTGCCACCTCCTCTCCTTCCCCTCTTTTCATGCATCTCTCTCCGCCATCTCTCTGCCATCTCCCCTCCACCCACCCACACATCTGTCCTCACTCCCCAG
Seq C2 exon
AACATGGGGGCTTCCAGCAGTTCTCTTTCCTTGGCTCCTTCCCACCGTCGCCCCCAGGATCTGCAGAGAGGTGCAGCTCTGCTATTTCTCCGCCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105357:ENST00000601313:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development