HsaINT0127099 @ hg19
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145012799-145013758:-
Coord C1 exon
chr8:145013518-145013758
Coord A exon
chr8:145012861-145013517
Coord C2 exon
chr8:145012799-145012860
Length
657 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
GCTGGTCTTGTCTCCCCCAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
TGAGCTGAGCCTGTGCCGAGTGAGCGTCTCGTGGGGCCGCCAGCCTTCAGCTGCCTGTGTGCCACACGGGGCTGCCCAGAGCACCGTGCCTGAGGCCGAGGGTCCGGGCGACGAAGGTGTGGGGGCAGCATGTCTCAGCACCAGCTCCGCGTGCCGCAGCCCGAGGGCCTGGGCCGAAAGAGAACCAGCTCGGAGGACAACCTGTACCTGGCTGTGCTCAGGGCCTCTGAGGGCAAGAAAG
Seq A exon
GTAGCAGGGCTCCCCTCGGGCACCCCCGCCAGGCAGGGCGGGCCCCTGCGGGAGGAAGGCCCACTTCCTGTGGCAGGAAAGCCTTGGCACCGCTGGGGGGCTGGTCTTGGAGATGGGGGTCGGGGGCCAGCCATCCCCACCCAACACGGAGTGGGCCGACAGGCGCCCGCGAGGCTGACGGGGGCCTCCGAGCGTCAGATGTCGGGCCTGGAAGGGCGAGGAACTCTGCGCTCTGGGGAAGGTTCGCTGCCCTGTCAGCAGCACACGCGGCTTCCCTTCCAACACCCCAGCGGGCCCGGGCCCTGGCTCTGCCACACCCCTGCTTGGGTCTCAGTCTGTAGAGGCCGGGGGGGACTGCAGGACGGGACTTGTGTGCCCTGGGCTCAGGGTGCGCCCAGGACCCTCCCATTTCCTCGGGGGAAGAGTCCGGGGTGGGGTGGCTGCACCTGGTGGCGCCTGGGCCCCTGGCACCTGGGTCTCTGCTGTGTGGCTGGGCTGCGGGTGAGGGCGCCTGGGTCTCAGTGTGTGATCTGAGGGAGGCTTTGGGGCTCCCCAGGCAGGACCTGGCCAGCCAGGCTGCTGTGTCTGCACGGTGGTCACCTGAGGGCCCCCGGGGCTTCTCCCAGGCCCCAGGTAAGCTGGTCTTGTCTCCCCCAG
Seq C2 exon
ATGAGCGGGATCGTGTGCAGAAGAAAACCTTCACCAAGTGGGTCAACAAGCACCTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-PLEC:NM_201384:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(12.9=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGAGCCTGTGCCG
R:
TTGATGAGGTGCTTGTTGACCC
Band lengths:
302-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)