MmuINT0121798 @ mm9
Intron Retention
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76025181-76026140:-
Coord C1 exon
chr15:76025854-76026140
Coord A exon
chr15:76025243-76025853
Coord C2 exon
chr15:76025181-76025242
Length
611 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
ACTGGTTTTGTCTCCTCCAGATG
3' ss Score
11.58
Exon sequences
Seq C1 exon
CACAAGAACTTCAGTCTGAGCTGAGCCTCTGCTGAGTTACAAGTTACTGTCCAGAGCGGCGGGCCGGCAGCCTCCAGCAGCCTGTGTACCACCGCACGCACGAGGCTGCCTAGACTAGACGGAGCCCAGCACCTGAGAACTGAGGGACAGGGTGACCAAGGGGCGGGGCAGCACCATGTCTCAGCACCGGCTCCGTGTGCCCGAGCCGGAAGGCCTGGGTAGCAAGAGAACCAGCTCAGAGGACAACCTCTACCTGGCTGTGCTCAGAGCCTCCGAGGGCAAGAAAG
Seq A exon
GTAGCTGGCATTTCTTCTGGGCAGGGCCTTGGTGACAGGAAGAGTCCTTCCTGTATCAGGAAGTCTTGGCACGGAGTGGGGTGGGGCCCTGTTAGAAGGGTATGGATTTCAGGGACAGGCTCCAAGATGGGGGCCAGTGACCCATGCCCAATACTGATTGGCCCTTGAGCCTTAAGCCAGGGTATCTAGGGCTCTCTGTGTCTCTGGGAAGGCCGGCTACCCTGTCAGGGAGGCTTGACTTACCCTCCAAAAGCCTTGCTGGCCCCAGCCCTACCATGCTCTTGCTCAGCCTGGGACGCAGCATGTGGGGTGGGGCAGGCTGGGACTTGTATGCTATGGGCTCTGTACAGTGGCTCTAGATCTCCTGCCTTAGAAACAACGGAGGTTTTGAACAGCAGCACCCTGCTGGGCCTGGCTAGACCTGGGCTCCTTGGTCTCTGGTGTCTGTGTGGGGAGGCTTCTTGGTGGACCCCCCTCTTTCTGATCAGGGAAAGGCCAGGAATTTGGCCTTGTCAGGTAAGGTTTGGTATAACAGGCCACTATGTCTGCACGTCTGGCGGCCTCTCTAGGTTTTTCCTAGGCTGTAGCTAAACTGGTTTTGTCTCCTCCAG
Seq C2 exon
ATGAACGAGACCGTGTGCAGAAGAAAACTTTCACCAAGTGGGTCAACAAACACCTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-Plec:NM_201394:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(12.9=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGAACTTCAGTCTGAGCTGA
R:
AGGTGTTTGTTGACCCACTTGG
Band lengths:
342-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: