DreINT0115609 @ danRer10
Intron Retention
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22891012-22894565:-
Coord C1 exon
chr19:22894368-22894565
Coord A exon
chr19:22891074-22894367
Coord C2 exon
chr19:22891012-22891073
Length
3294 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TGTCTTTTTGTGTCTTGCAGATG
3' ss Score
13.46
Exon sequences
Seq C1 exon
ATCAGACCGGGTGTAAAGAGCAGTTCAGGTGGTTTGAACAGATCAGCAGTAAGTGTGAAACTGGGTTCACACAAGGATAAGAAATGGCTGTCTATAAAGGTTACAGAACGTACTCTACTGACAGTGTTGGCAGTGATGTGGTCTTCACAGAGGACAATCTATACCAGGGGATGCTGAGGGCCATGGATGAAAGAAAAG
Seq A exon
GTACTGCGGAAATACTCTGTTTTATACTTAATAGTTTATTTGGATTGTTAAAACTTTTAATCTACACAATCTGGAATGTGGAATGAGGCATTTTTGCTTTAGTCGAGTGACACGTTTGAAGTTTTGGTTTTACCCTTAGTTGATTTTAGCTATGCAATCAAGTTATTATTCTGCATAATAGTCGACCCCTTATGGACAGGCCAAATATACTTGTAGTCTTTCCAACAGGTAATACTAAGTGTAAAGATGTGAAATGAAAGTTTTGGGGCTCCAAAAGGGAGGGGCTTTTGCAAAGGCGGATCTCAAATCTGGGTTGTGGTCCTGTGTGCACACGCTTGGCATGTTGGAAAAGAGGTCACAATTTGGGTTCAGCAAAACTTAAACATTGTAAATGTTCTTGATTTATTTTTCTAACTTTGATTTACACTGACACATTACTTCATAGAGTAAAAATCCATTCCCGCAAGGTATGTTTTCAGTTTTACGAGTGTCAAATTCAGTGCAGGGATATGCATCTTTCCTTCAGATCTTGTGTTTCAGAGTGTGAAACCTGAAAACTTCCCTTGGCTTTTAGATGCAGGTAATACCTTTCCATTATGAGGCTCTACGGGTCTGTTTTTGCTTGGAATTTTAAGTGCCCCCTTAATCCAGCCTTTGACCCGTCTGACATTATAGGTGATCACACATGTTTTAGAGCTGTTCTCAGATCAGTTTACGGTTGAAATTTGCTCACATACAGATCAAAACTTCTGTCTATATAGGGTGATAATTGCATATTGACACAAGTTCTTATATGCAACGTATATTTCAATATATTACAAAAATGTGCAATCACAGTACATATATTGTATAAATAACCATTGTAATTACATAAATATGTGTATATGGTCAACTATATTAGCTAACTGTTCATATAAGGCCATATATCAGATTTGTGTGTGGGTATGCGTGTGTACAAATGCATCATGCAGAAAATAAAGGTTAATAAAGGACGTAAAGAGCAGTTACTCATAATAATGCTTTCAGAGAAACTGGTTTACGTGACAGTATGAGCTTTAAGAAACAGGAAGTGATATAGTGATGCCAACTGGCACTGTAAACCATGGCAACAAAACGACAGAATAACAACATGCATTCAGCGCCCTACGGGTGTTTCGTTTTGCCTTGTTGTCCTGAATGACCTTATCTCATCGTGTTTTGATGAAATAGTGAGAAATACTGGAACTTTGAAGGCCTTATCATAAGTTTAAGATTTGTTTTGTTGGTTTGTTGTAAAATTTCAGTCATGCTGGCTGATCAGAAATTACGTCAGTCTTAGTGTTTTTGTCTTGTGACTGAGCGCTGTTGTTCTTCTTCAAATAAAGAGTTCAAAAGCCTCTAAATGACGTCTGAAATTTTGTTCTGAAATGTGACCCTGGACCACAAAATCTGCCGTAAGTGTGCATTTTTGGAAATTGAGATTTAGGCAAATGTAAATTAATAAGGCTTCCATTAATGTAGACTTTGCTAGAATGAGTTGAGAAATGACAGATAATCGGAAATCTAGAATTCAAGGTTTTTAAAAATATACAATTGAGTGCCATTCATATTACTAAACAAAAATATATATTCACTGTATTAAATATATAAATTGTCTTCAAGTAACGTGATCTTTATTTAATATTTAAACGATTTCTGGCATAAAATAAATAATACTTTTTTTATTTTTATTTTGACCAATACGGCTTATTTTTGGCTGTATCCAGAAATATACATGTACAATATGATACTGTTTTTGTGGTCCAGGGTCACAAATGAGCATTTTCCAATGGCTCTTGTGCGTTGGTTGAGTTTTATCACATTCATGACAATGAATATGTTGTTTTCATTGCGTTTAAAGTGAAATAATTGAAAAAGAGGTTTTTCAACTCATCAAATGTTCTTTAATGTAAAGTATCTTTATCTTGAAAGCATTTGTAGTGATTGTTTTTATGCTAGCTTAAGTGCAGCATCATCAAAAAATCAAATTAGGACCGATTGAGTATAATGTATTAGTCTTATATTTGTATTGAATCCTTAGCCAGAATCATTGTGAAACCCACTAGTTTAAGGTGGTGGAACTTTTGGAACATCTCACTTCTTTTACATGCCTTGAAGCCAGTTTCCACATTAATATTTAATGACATTGGTAATAATAGTAATTTGAGATGAAGGTAAATGCGGAACATTTCAATGCTTTTAAACAAATTGAAAAGCAAATAAAGGAATGAAACAGTCTTGGCAAAAAACAATCTGTAGTCAGTCGTGGGTTTCCCAGAAGCATATTAGTTCAAGATTATCTTTATTTGTCAGTAGGAAGTCACATGTTTTGTCACTAATGTCTGAACGAACGTTAATGAAGTCAGTAACGTACAGTGAAAGTAGCAGAAATCCTCCAGTCACCCACACCAGTGGAATGTTTTTAAAATGCTCAGATGAACAGATATAGACCGCTAATTTTCACTGTGGTATCTCTAAGATATGCTCTTGTTCATAACATGAGGGCCCACCCAGTCAATGTGCACAATTTTGGTTGACGGTGAATACCATTGAGAGACCTCACTTATAGAATACTCTCATATATTCACTCCAAAGAAGCATTTATTCGAATAGAAATACAGTAGAGGTAGCATTAATGTGAAATACAGCTACTTACTATAGCAATAATGCATTAATATTGCTATACAATATATAATATGACTTAATATTGCTATACAAATATAGCACTTATGTGAAATAGCTACTTTTCATGTTAATATATCTTAAAATAAAGCTAAATATTTTGCATCCATTAGTTTAATTTTCACTGTCACCATGATCCTACAGAAATATACTGATTACCGCTCAAAAATATTATATTTTGTTAGAACAGTTAAACAGACAGTTTTATTTGAAAATTTTAATTAATGTAAGGTTTTGAAAACCGTAAATGAAAAGCATTCATTTAAAATAAATGTCTTTCCTAAATGTCAGTTTAAAGCCTCCTTGCAATAAAAATAAACATTTGATGGAATTAAAACTCTACTGAAGCCAATAATGACGCAAAAAAGCACATTCTAAATTCACTTAACATTTGCTTCTCTAAAATCCTTATCATGTGGAACCACATAAAACCAACTATAAAAACCACACAGAGCACTATTATCAATAGAAAGGAGAAGTTCTCATCAATTCAGAAGTTTCCATTGTGTGTTATATAATGTCAACTGTTTCCCAATGTCTCTCTCTGATTTTACGCCATTTTAATAATAAAATGTGTCTTTTTGTGTCTTGCAG
Seq C2 exon
ATGAACGGGATCGAGTACAGAAAAAGACCTTTACAAAATGGGTGAACAAGCATCTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590:ENSDART00000090679:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(12.9=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]