RnoINT0113097 @ rn6
Intron Retention
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117253818-117254765:-
Coord C1 exon
chr7:117254494-117254765
Coord A exon
chr7:117253880-117254493
Coord C2 exon
chr7:117253818-117253879
Length
614 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CTGGTTTTTGTCTCCTCCAGATG
3' ss Score
11.87
Exon sequences
Seq C1 exon
CACAGGAACTTCAGTGTGAGCTGAACCTCTGCTGAGTTACTGTCCAGAGCGGCCGGCAGCCTTCAGCAGCCTGTGTACCACCGCACAAGGCTGTGTAGACCAGACAGAGCACAGCACCTGAGAGCCGAGGGACAGTGTGACTAGGGGGAGGGGCAGCACCATGTCTCAGCAACGGCTCCGTGTGCCCGAGCCTGAAGGCCTGGGTAGCAAGAGAACCAGCTCAGAGGACAACCTCTACCTGGCTGTGCTCAGGGCCTCCGAGGGCAAGAAAG
Seq A exon
GTAGCTGGCATTTCTTCTGGGCAGGGACTTGGTGACAGGAAGGATTCTTCCTGTACCAGGAAGTTTTGGCACAAAGTGGGGTGGGGCCCTGTTATAAGGGTATGGATTTCGGGGACAGGCTCCAAGATGGGGGCCAGTGATCCATGCTCAATACTGATTGGCCCTTGAGCTTTAAGCCAGGGTATCTAGGGCTCTCTGTGTCTCTGGGAAGGCCGGTTGCCCTGTCTGGGAGACAACTTTCCCTCCAAAAGCTCTGCTGGCCCCAGCCCTGCCATGCTCTTGCTCAGCCTGGGAGGCAGCATGTGGGGTGGGGCAGGCTGGGACTTGTATGCTGTGGGCTCTGTACAGTGACTCTAGACCTCCTGTCTTAGAAACAATAGAGGTTTGGAACAGCAGCAACCTGGCTAGACCTGGGTTCCTTGGTCTCTGGTGTCTGTGTGGGGAGGCTTCTTGGTGGATCACTCACTGTCTTCTGATCTGAGAAAGGCCAGGGATTGCCCCGGTGGAGCCTTGTCAGGCCAAGGTTTGGTAAAACAGGCCACTGTGTTTGTACCTCTGGAGGCCTCTCGAGGTTTTTCCCAGGCTGTAGGTAAACTGGTTTTTGTCTCCTCCAG
Seq C2 exon
ATGAACGAGACCGTGTGCAGAAGAAAACTTTCACCAAGTGGGTCAATAAACACCTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781:ENSRNOT00000006311:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=PU(12.9=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGAACTTCAGTGTGAGCT
R:
CTTGATAAGGTGTTTATTGACCCACT
Band lengths:
334-948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]