HsaINT0135719 @ hg19
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49138788-49139138:-
Coord C1 exon
chr3:49139053-49139138
Coord A exon
chr3:49138875-49139052
Coord C2 exon
chr3:49138788-49138874
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCCCATCCCCCTTATTTTAGGTA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGAGAACTACAAGACCCCAGGCTATGTGGTCACTCCACACACCATGAATCTACTAAAGCAGCACCTGGAGATTACTGGTGGGCAG
Seq A exon
GTGTGTGGGGATGTGGCCATGTGAGCTTGTGCCATCAAACACCTGCCTGAGTGCCTGGGCTGCGTCCATACTGCCCCATCTCACCCATCACCATGGCCTTCCTGGGAGGGAACATCTGTTTCTTTAAGGTCATCTGAGCTCAGACTTTATTTCTCTTTTCCCATCCCCCTTATTTTAG
Seq C2 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=70.0)
C2:
PF0455710=tRNA_synt_1c_R2=PD(7.7=20.0)


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTACAAGACCCCAGGCT
R:
AGCCAAAGTTGAAATTGATGGCT
Band lengths:
162-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)