MmuINT0130128 @ mm9
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108413662-108413949:+
Coord C1 exon
chr9:108413662-108413747
Coord A exon
chr9:108413748-108413862
Coord C2 exon
chr9:108413863-108413949
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TATCCCATTCCTTTACTTAGGTA
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTGAGAACTACAAGACGCCAGGCTATGTGATCACTCCATATACCATGGATCTGCTGAAGCAGCACCTGGAGATCACTGGGGGACAG
Seq A exon
GTGTGTGGGGGTGTGGCCAGGCAGACACTTGACTGCCTAGGCTGCCTCATCTCATCTATTTCAGTAGGTGATCTGAGCTTTGGTCCCATTCCCTTTATCCCATTCCTTTACTTAG
Seq C2 exon
GTACGTACGCGGTTCCCTCCAGAGCCCAATGGAATCCTGCATATTGGACACGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-Qars:NM_133794:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACTACAAGACGCCAGG
R:
GGCATAACCAAAGTTGAAATTGATGG
Band lengths:
170-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: