Special

HsaINT0135719 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49101355-49101705:-
Coord C1 exon
chr3:49101620-49101705
Coord A exon
chr3:49101442-49101619
Coord C2 exon
chr3:49101355-49101441
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCCCATCCCCCTTATTTTAGGTA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGAGAACTACAAGACCCCAGGCTATGTGGTCACTCCACACACCATGAATCTACTAAAGCAGCACCTGGAGATTACTGGTGGGCAG
Seq A exon
GTGTGTGGGGATGTGGCCATGTGAGCTTGTGCCATCAAACACCTGCCTGAGTGCCTGGGCTGCGTCCATACTGCCCCATCTCACCCATCACCATGGCCTTCCTGGGAGGGAACATCTGTTTCTTTAAGGTCATCTGAGCTCAGACTTTATTTCTCTTTTCCCATCCCCCTTATTTTAG
Seq C2 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.053 A=NA C2=0.133
Domain overlap (PFAM):

C1:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(7.1=20.7)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(80.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTACAAGACCCCAGGCT
R:
AGCCAAAGTTGAAATTGATGGCT
Band lengths:
162-340
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development