Special

RnoINT0121201 @ rn6

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117300934-117301232:+
Coord C1 exon
chr8:117300934-117301019
Coord A exon
chr8:117301020-117301145
Coord C2 exon
chr8:117301146-117301232
Length
126 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TATTAAATTCCTTTTCTTAGGTA
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTGAGAACTATAAGACGCCAGGCTATGTGACCACGCCACATACCATGGATCTGCTAAAGCAGCACCTGGAGATCACTGGGGGACAG
Seq A exon
GTGTGTAGGGATATGGCCAGGCAGACCCTTGTTTGAGTGCCTAGGCTGCCTTGTCATCCATTCCCATGGCCACCCTCAGTGATCTGAACTCTGGTCTCATTGCTTTTATTAAATTCCTTTTCTTAG
Seq C2 exon
GTACGAACCCGGTTTCCCCCAGAGCCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.138 A=NA C2=0.103
Domain overlap (PFAM):

C1:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(9.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACTATAAGACGCCAGGC
R:
GGCATAACCAAAGTTGAAATTGATGG
Band lengths:
170-296
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]