HsaINT0148380 @ hg19
Intron Retention
Gene
ENSG00000143379 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:10761]
Coordinates
chr1:150916396-150917584:+
Coord C1 exon
chr1:150916396-150916469
Coord A exon
chr1:150916470-150917393
Coord C2 exon
chr1:150917394-150917584
Length
924 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTACTTCTTCCTTGAAACAGTGA
3' ss Score
6.33
Exon sequences
Seq C1 exon
GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTCACACAGTCGGAACTGTATCCCATTTGCCGGCCAC
Seq A exon
GTGAGTGTTTCTCCCTTATTCCTTAGCTCAGTTTTCTCCTCTACCTTGTATTTCTTCTTAGGACATCCAGTTGAAAAGCCCTAGTGTTTTTGGTATTTCAGTCTCAAAGAGCATAAGTTTGGTTGATGTCTTTTGCTCCCAAAGGTCAGTTTGCTCCCAAAAGAGATACAGTTTTATTGTTCATCTCCAGGACTGGGTCTTTGTAGACAAAGAGTGAGACACTAGAAGATCATGAATGGCCTTGAGTAGACTGCTCACGTTATAGATGTGCTTCAATTTCATTTCTAAGTGAGTTACGTTGGAAAAGGTGTTACTTCTTTCCTAGTGTCATACTGCACCTAACATTTGTATAAATGTGTAGTCTGCATAATGCTTTCCACAGAAGCTGTGTTAGATGGAACCTCATAGTGTCCACTATATTTGTTACCCTGGCTTGGGAGCAGACTCCTATGGAAACAATCATTTTTAACTGCAGAAGAATCAACTAACACTTTTGTTTACACATAACATGACAGTAAACACATTCTGAGTCTCTTAAAAACCTGATAGAGAATGAGAAGGAAGGACTAATTTTTTTCATTTCATGATGCCACCTGATCTTTTTAAATTTACCACTAGACTGATCAACAAGTGAGCAAGAATTTCCACTTGAATTTTCCAGAGGAGAAACATCCATTTGTGTAAAATAAGTGAATCACCTATATTGTACATTTCTTATTTAGTATTTACTTGATTTGTAAGTATGTACAGTTTGTACATTAGGTTTATTACTTAGGTGGTCTTGGCTTTGCTTCCCTTGAGGTTCTGATTTTACTTTTTCTCTCCTTTTCAACTTAAAAAGTATCAAATGTCTCCTGGCCAAGTCTTTTCCCTATCAAGACATGCCCTACCTGCCCTCTCAGTTCTACTTCTTCCTTGAAACAG
Seq C2 exon
TGAAAAAGACTTGGGAGGACATAGAAGACATCTCCTGCCGTGACTTCATAGAGGAGTATGTCACTGCCTACCCCAACCGCCCCATGGTACTGCTCAAGAGTGGCCAGCTTATCAAGACTGAGTGGGAAGGCACGTGGTGGAAGTCCCGAGTTGAGGAGGTGGATGGCAGCCTAGTCAGGATCCTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-SETDB1:NM_001145415:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(20.7=100)
A:
NA
C2:
PF150571=DUF4537=PD(5.8=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCATTTTCTTTGATGATGGCT
R:
GGAAGAGGATCCTGACTAGGCT
Band lengths:
263-1187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)