DreINT0133548 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22102774-22103268:-
Coord C1 exon
chr16:22103195-22103268
Coord A exon
chr16:22102965-22103194
Coord C2 exon
chr16:22102774-22102964
Length
230 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
TCCTGTTTGCCTGTATTCAGTGA
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTTCCTGATCTTTTTTGATGATGGTTATGCCTCATATGTGGGCTTGCCTGAGCTCTACCCTATCTGCAGACCAT
Seq A exon
GTAAGAACTTTTTCTTCTTCCTTTTTTGTTTAATTTATTTTATGTTTTAGTATTTGATGTCAAACACCTTTTGTAATGCTGATCTTTTTAATTGGAATTCCATTTTTATCAATAGACAAGGTTTTAAATAAATAATACATTTCCATGAATGGTTTTGAAATAAAATGGTGTTAATTCCACTAAAGGAGTAGTTATAATGGCTCTGTCTCCTCCTGTTTGCCTGTATTCAG
Seq C2 exon
TGAAAAAGACCTGGGAGGATATTGAGGATGCGTCCTGCAGAGATTTCATTGAGGAGTATATCACATCATATCCTAACAGACCCATGGTTTTACTGAAGCCAGGGCAAATTATAAAAACTGAATGGGAGGGAACATGGTGGAAGAGCCGTGTGGAAGAAGTGGATGGCAGCCTTGTGAAAATGCTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(21.0=100)
A:
NA
C2:
PF150571=DUF4537=PD(4.2=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGATGATGGTTATGCCTCAT
R:
CAGGAAGAGCATTTTCACAAGGC
Band lengths:
254-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]