GgaINT1003172 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1736263-1736850:+
Coord C1 exon
chr25:1736263-1736336
Coord A exon
chr25:1736337-1736659
Coord C2 exon
chr25:1736660-1736850
Length
323 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTCTCCCTTTCTGTACAGTTA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTTCTTGATCTTCTTTGATGATGGCTACGCTTCGTACGTCAAGGAGTGGGAGCTGTACCCGGTCTGCAGGCCGC
Seq A exon
GTGAGTGACCTCTGCCTCTCCCGTGTCCTAATGCTGGGATTACTCAGGGTGCCTGTGGGCACGCAGAAGAGCTTATCTTGAACGTGGAGGTCATGCACATTTCCGTGCTGTGCCTGTAGAGATTTGCTTCGCATGCAGAGTGGGAGGAAGCGATGTTTTATTGCCTGCACAGCAGCATGCTGCAGCTCCCTGCACACCGGGGGCGTTGGTGTGGCCGTGTGCCCTGCTGCCCAGCCTGCTGCCTGAGGGTTCCTAGCAGAAATCCGTTTGATAGGGAGCCAAAGGACCTTTCCCCAGCCTCATTTCTCTCCCTTTCTGTACAG
Seq C2 exon
TTAAGAAGACGTGGGAGGACATAGAGGACGTGTCGTGCCGGGACTTCATTGAGGAGTACATCAGTGCATACCCCAACCGTCCCATGGTGCTGCTGAAGAATGGCCAGCTGATCAAAACCGAGTGGGAGGGGACCTGGTGGAAATCCAGGGTGGAAGAAGTGGACAGCAGTCTGGTCAAAATCCTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051:ENSGALT00000040574:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(20.2=100)
A:
NA
C2:
PF150571=DUF4537=PD(5.6=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTGATCTTCTTTGATGATGGCT
R:
GAAGAGGATTTTGACCAGACTGCT
Band lengths:
262-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]