BtaINT0131667 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19857669-19858853:-
Coord C1 exon
chr3:19858780-19858853
Coord A exon
chr3:19857860-19858779
Coord C2 exon
chr3:19857669-19857859
Length
920 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTACTTCTTCCTTGGGACAGTGA
3' ss Score
5.4
Exon sequences
Seq C1 exon
GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTGACACAGTCTGAACTGTATCCCATTTGCCGGCCAC
Seq A exon
GTGAGTGTCCCTCCTTTTTTCCTTAGCTCTTTTTGCTTCCTCTTCTACCTTGTATTTCTTAAGACAACCAGTGGAAAAGCCCTAATGTTCTTGGTGTTTTAGTCTCTGAGAGCATAAGTTTGATTAATGTTCTTTGAGAGAGAACAGTTTTATTTGCTCATGTCTAGTGTTAGGTCTTGGCAGCCATAGAGTCAGACATTAGAAGATCATGACTGACTTTGAGTGGATGCACGTATTGTAGATGTGTTTTAATTTCATTTCTGAGTGATTTAAGTTTGAGAAGATGTTACTTCTTTCCTAGTCTCATGTTTAACATTTGTGTAAATCTGCAGTCTGTGTAGTGCTTTCAGAGTGCTTTCTACAGAGCCTGTATTAGATGGGGTCTTCATAGTGTCCTCTATACTTGTGACTCTGGCTTAGGAGAGACTCTTATAGAAGCAACTGTTTTTAGTTGCAGGAAAGTCAAGTAAAATGGCTGTTTCCACATAACACGGCAGTAAATACACTCAGGGTCCTTTGAAAGCCTGATGGAGCATGAGAAGGAAGGACAGGTTTTTTTTAAATCAGTTTATGGTGCCACCTGATTCTTTTTGATTTACCTTTAGACTTATCAAGTAAGCAAGAACTTCCACTTGACTTTTCCTAAGAGGAAACATCCATGTCTAGGAAATGAGTGACTCACCTGTGTTTACATACTGCTAATTCATTTAGTATTTGCAGAATTTGAGTGTGCGTTTGCACATTAGGTTCAGTACTTTTAAGTGGTCATGGTTTTGCTTCCCTTGAGGTTATGATTTCTTCATTTATTTTTTTTCTCCCTCCCAACTTGAAAAATGCCAAACGTCTCCTTGTCAACCCTTTTCCCCTATCAAGACATGCCCCACCTGCCCTCTCTCAGCCCTACTTCTTCCTTGGGACAG
Seq C2 exon
TGAAAAAGACTTGGGAGGACATAGAAGACATCTCCTGCCGAGACTTCATAGAAGAGTATATCACCGCTTACCCCAACCGCCCCATGGTGTTGCTCAAGAGTGGCCAGCTGATCAAGACCGAGTGGGAAGGCACGTGGTGGAAGTCCCGAGTCGAGGAGGTGGACGGCAGCCTAGTCAGGATCCTCTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(20.2=100)
A:
NA
C2:
PF150571=DUF4537=PD(5.6=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCATTTTCTTTGATGATGGCT
R:
AGAAAGAGGATCCTGACTAGGCT
Band lengths:
262-1182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]