MmuEX0011452 @ mm9
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116434801-116435819:+
Coord C1 exon
chr5:116434801-116434938
Coord A exon
chr5:116435414-116435594
Coord C2 exon
chr5:116435728-116435819
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTTGCTCTTCTCTAGAAT
3' ss Score
9.87
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
AATTCAGCCGGCGTCTGAAAGAGCGCATGCACCACAACATCCCTCACCGGTTTAATGTGGGCCTGAACATGAGAGCCACCAAGTGCGCCGTGTGTCTGGATACTGTGCACTTTGGACGCCAGGCATCCAAATGCCTCG
Seq A exon
AATGTCAAGTGATGTGTCACCCCAAATGCTCCACCTGCTTGCCCGCTACCTGTGGCCTGCCAGCTGAATATGCCACACACTTCACTGAGGCCTTCTGCCGGGACAAAATGAACTCCCCGGGGCTCCAGAGCAAGGAGCCTGGCAGCAGCTTGCACCTGGAAGGGTGGATGAAAGTGCCCAG
Seq C2 exon
AAATAACAAACGGGGACAGCAAGGCTGGGACAGGAAGTACATTGTTCTGGAGGGGTCAAAAGTCCTCATCTATGACAATGAAGCCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'48-49,'48-48,49-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=0.213 C2=0.063
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(59.6=66.0)
A:
PF0013017=C1_1=PD(38.5=32.8),PF0016924=PH=PU(8.3=16.4)
C2:
PF0016924=PH=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGCCGGCGTCTGAAAG
R:
TCTGGCTTCATTGTCATAGATGAGG
Band lengths:
226-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: