GgaEX6014270 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9891008-9891878:+
Coord C1 exon
chr15:9891008-9891145
Coord A exon
chr15:9891406-9891586
Coord C2 exon
chr15:9891787-9891878
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTGTTTTTGTCAGAAT
3' ss Score
8.55
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGTACAGTCGGTGCCTGAAAGAGCGAATGCATCATAATATCCCACATCGTTTTAATGTGGGGCTAAATATGAGAGCAACAAAATGTGCAGTGTGTCTGGATACTGTGCACTTCGGACGGCAGGCATCTAAATGTCTTG
Seq A exon
AATGCCAAGTGATGTGTCACCCAAAATGCTCAACTTGCTTGCCAGCTACTTGTGGACTGCCAGCAGAATATGCCACACATTTCTCTGAAGCATTCTGCCGGGATAAAATGAATTCTCCTGGTCTGCAGCTGAAGGAGCCAAGCAGCAGTCTACGTCTTGAAGGGTGGATGAAAGTGCCAAG
Seq C2 exon
GAATAATAAACGTGGGCAACAGGGCTGGGACAGGAAGTATATTGTCCTGGAAGGAACAAAAGTGCTCATTTATGATGCAGAAGCAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(59.6=66.0)
A:
PF0013017=C1_1=PD(38.5=32.8),PF0016924=PH=PU(8.3=16.4)
C2:
PF0016924=PH=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGTCGGTGCCTGAAAGA
R:
TGCTTCTGCATCATAAATGAGCAC
Band lengths:
222-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]