RnoEX0021381 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46354569-46355452:-
Coord C1 exon
chr12:46355315-46355452
Coord A exon
chr12:46354800-46354980
Coord C2 exon
chr12:46354569-46354660
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTTGCTCTCCTCTAGAAT
3' ss Score
9.07
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
AGTTCAGCCGGCGTCTTAAAGAACGTATGCACCACAACATTCCTCACCGGTTTAACGTGGGCCTGAATATGCGAGCCACCAAGTGCGCCGTGTGTCTGGATACTGTGCACTTTGGACGCCAGGCATCCAAATGTCTCG
Seq A exon
AATGTCAGGTGATGTGCCATCCCAAGTGTTCCACCTGCTTGCCCGCCACCTGTGGCCTACCTGCCGAATATGCCACACACTTCACCGAGGCCTTCTGCCGAGACAAAGTGAGCTCCCCGGGGCTCCAGAGCAAGGAGCCCAGCAGCAGCTTGCACCTGGAAGGGTGGATGAAAGTGCCCAG
Seq C2 exon
GAATAACAAACGAGGACAGCAAGGCTGGGACAGAAAGTACATTGTCTTAGAGGGTTCAAAAGTCCTCATCTATGACAACGAAGCCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'63-57,'63-56,64-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.164 C2=0.062
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(59.6=66.0)
A:
PF0013017=C1_1=PD(38.5=32.8),PF0016924=PH=PU(8.3=16.4)
C2:
PF0016924=PH=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGCCGGCGTCTTAAAG
R:
CTTCTCTGGCTTCGTTGTCAT
Band lengths:
230-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]