BtaEX6072749 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57971705-57973597:+
Coord C1 exon
chr17:57971705-57971842
Coord A exon
chr17:57972690-57972870
Coord C2 exon
chr17:57973506-57973597
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGTTCACTGCTTTTCCCTAGAAT
3' ss Score
8.86
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
AATTCAGCCGGCGTCTTAAGGAGCGCATGCACCACAACATCCCTCACCGGTTCAACGTGGGACTGAACATGCGAGCCACGAAGTGCGCCGTGTGTCTGGATACCGTGCACTTCGGGCGCCAGGCATCCAAGTGTCTCG
Seq A exon
AATGTCAGGTCATGTGCCACCCCAAGTGCTCCACATGCTTGCCAGCCACCTGTGGCCTGCCAGCCGAATACGCCACACACTTCACCGAGGCCTTCTGCCGCGACAAAATGAACTCCCCGGGTCTGCAGTCCAAGGAGCCCAGCAGCAGCCTGCACCTGGAAGGGTGGATGAAGGTGCCCAG
Seq C2 exon
GAATAACAAGCGAGGACAGCAAGGCTGGGACAGGAAGTACATCGTTCTGGAGGGCTCCAAAGTCCTCATTTATGACAACGAAGCCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-'46-43,'46-42,47-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.213 C2=0.062
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(59.6=66.0)
A:
PF0013017=C1_1=PD(38.5=32.8),PF0016924=PH=PU(8.3=16.4)
C2:
PF0016924=PH=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGCCGGCGTCTTAAGG
R:
CTTCTCTGGCTTCGTTGTCAT
Band lengths:
230-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]