DreEX6008978 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2164284-2166052:-
Coord C1 exon
chr5:2165915-2166052
Coord A exon
chr5:2165581-2165761
Coord C2 exon
chr5:2164284-2164375
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTCTCCTCCAGAAT
3' ss Score
10.99
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AGTACGGACGGCGTGTAAAGGAGCGAATGCACCACAACATCCCTCATCGCTTCACAGTGGGTCTGAACATGAGAGCTGCTAAATGTACCGTCTGTCTGGACACCGTTCACTTCGGCCGACAGGCGGCCACCTGTCTGG
Seq A exon
AATGTCACACTCTCTGCCACCCCAAGTGTTCCCCGTGTCTGCCAGCCACCTGTGGTCTTCCTGCTGAGTTCGCCACACACTTCTCGGAGGCTCTGTGTCGGGATAAGACCAGCTCTCCTGCTCTGCAGGTCAAGGAGGCGTCGGGACATGTGCGCCTGGAGGGCTGGATGAAGCAGCCCAG
Seq C2 exon
GAATGGTAAGCGAGGACAGCAGGGCTGGGAGAGGAAGTATGTGATCCTGGACGGCACTAAAGTTTCCATCTATGAGTCAGAGCCCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856-'43-49,'43-47,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.167 C2=0.188
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(59.6=66.0)
A:
PF0013017=C1_1=PD(38.5=32.8),PF0016924=PH=PU(8.3=16.4)
C2:
PF0016924=PH=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGACGGCGTGTAAAGG
R:
CTTCAGTGGGCTCTGACTCAT
Band lengths:
229-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]