MmuEX0012137 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61840078-61843654:-
Coord C1 exon
chr10:61843568-61843654
Coord A exon
chr10:61842604-61842681
Coord C2 exon
chr10:61840078-61840116
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTGGTTGGTTTTATGAACAGGGC
3' ss Score
6.1
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGGGAGAGGGGGAAGAAGGGCTCTAGAGGGCCTAAAGGGGACAAGGGGGACCAAGGAGCACCTGGACTAGACGCCCCCTGCCCGCTG
Seq A exon
GGCCACCGAGGTTTTAAAGGAGAGAAAGGGGAGCCGGGGCTACCAGGGCTGGACGGACTGGATGCCCCATGCCCACTG
Seq C2 exon
GGAGAAGATGGCTTACCAGTCCAAGGCTGCTGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(41.4=100)
A:
NO
C2:
PF0139113=Collagen=PD(10.0=53.8)
Main Inclusion Isoform:
ENSMUST00000105454fB1088
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAGAAGGGCTCTAGAG
R:
CTTGTTCCAGCAGCCTTGGAC
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types