DreEX0002943 @ danRer10
Exon Skipping
Gene
ENSDARG00000091398 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr13:7747428-7758489:+
Coord C1 exon
chr13:7747428-7747463
Coord A exon
chr13:7753021-7753098
Coord C2 exon
chr13:7758451-7758489
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATGACTGATTTCATAAACAGGGT
3' ss Score
7.08
5' ss Seq
GTGGTATGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GGTTTAGTAGGACCACCGGGATTAAAAGGAATCAAG
Seq A exon
GGTTTCCGAGGCTTGAAAGGGGAGAAAGGTGAACCGGGGCTGCCAGGCCTGGATGGGCTAGATGCCCCATGTGCTGTG
Seq C2 exon
GGTGATGATGGTCTGCCAGTACCAGGGTGTTGGAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091398_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.823
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(15.9=100)
A:
NA
C2:
PF0139113=Collagen=PD(17.9=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAGTAGGACCACCGGGA
R:
TTCCAACACCCTGGTACTGGC
Band lengths:
71-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]