DreEX0002942 @ danRer10
Exon Skipping
Gene
ENSDARG00000091398 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr13:7747428-7758489:+
Coord C1 exon
chr13:7747428-7747463
Coord A exon
chr13:7752399-7752485
Coord C2 exon
chr13:7758451-7758489
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGAATGCACTTGTTTGCAGGGG
3' ss Score
6.51
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGTTTAGTAGGACCACCGGGATTAAAAGGAATCAAG
Seq A exon
GGGGAGAGGGGCAAGAAAGGCAACAGGGGGGCCAAAGGGGATAAGGGAGACCAAGGAGCCCCTGGATTAGATGCCCCGTGTCCGTTG
Seq C2 exon
GGTGATGATGGTCTGCCAGTACCAGGGTGTTGGAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091398_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.980 C2=0.823
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(15.9=100)
A:
PF0139113=Collagen=PD(44.1=89.7),PF0149813=HTH_Tnp_Tc3_2=PU(2.1=3.4)
C2:
PF0139113=Collagen=PD(17.9=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAGTAGGACCACCGGGA
R:
TTCCAACACCCTGGTACTGGC
Band lengths:
71-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]